Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0412 ATGGCGGTTCCTTCTCCGACGGTCACCATTGTACCGGCGTCTCTCTACGTCGGCGATCTCCACCCCGACGTCTCCGAGGGACAGATCTTCGAACTGTTCTCGGAATTCAAGAGTCTCGCTTCCGTTCGCGTTTGCCGTGATACTTCCACCGGAAAATCGCTCTGTTATGGCTACGTTAACTTCGTTTCTCCGCAAGACGCGATTCGTGCGATTGAGCTGAAAAATCATGCTATACTGAACGGGAAAGCGATAAGGGTGATGTGGTCACGTCGTGATCCTGGTGCGAGGAAGAACAACTCAGCGAACGTGTTTGTTAAGAACTTAGCTGAATCAATAGACAATGCGGGACTAGAAGACTTGTTTAAGAGATTTGGGAATATTTTGTCCAGCAAAGTTGTCATGTCTGAGAATGGGAAGAGCAAAGGATATGGCTTTGTTCAATTTGAATCAGAGGAATCTGCAAATGCTGCCATTGAGAAGCTGAATGGCTCTACTGTTGGTGATAAGCAGATATATGTTGATAGATTTGTCAAAAAGAGTGACTGCGTTTTGCCAGGATCTGAGGCTCGGTATACAAATTTGTACATGAAGAATTTGGACCTTGACATCACGGAAGCAGTTCTGCAGGAAAAGTTTTCTTCTTTTGGGAAAATTGTTAGCTTGGCTATTGCAAAGGACAACAAAGGGGTGTCAAAAGGTTTTGGCTTTGTGAACTATGATAATGCGGATGATGCTAAAAGGACACTTGAGGCGATGAATGGAACACAATTTGGTTCAAAGATTATATATGTAGCCAGGGCACAAAAGAAGTCCGAGCGTCAGCAGATCTTGACTAATCAGTTTGAGGAGAAACGTAAGGAAAAAATCATAAAGTATGAGGGGTCAAACATTTATGTAAAGAACATTGATGACAATGTTAGTGATGAAGAACTGCGAGATCAGTTTAGTTCATGTGGCACAATTACTTCTGCAAAAATTATGCGCAACAGCAAAGGGATAAGCAAAGGGTTTGGCTTTGTCTGTTTCTCCACTCCTGAGGAGGCTAACATAGCTGTGAACAATTTTCATGGATTCATGTTTCATGGTAAACCACTATATGTTGCGCTTGCTCAAAGGAAAGAGGATAGGCAGGCATACTTGCAGCTCCAGTATGCACAGAAAATAGCTGGACCTTCAACTGCCGCTACCCCTGGTGGATATCCTCCTCTCTACTATGCAGCTGCTGGTGTTACTTCACAGGTGCCTCTTGGAGCTGGGCTGGTGTATCAATCTCGGGCATTGAGGCCAGGATGGAGAGCTAATGCCTATGCATCTCCTGCTAGATCATTCCAACAATCACCAGTTCCTGTTCTAACTGGACAGGCTAAGTATGTAACCAGTGGGCACCATGGAAAGATGGTAAAAGGATCTGAGTTCACATCTGGTGCTTCTAACTATAGTGGAGGTTCCCAGGGATCAGAAATGCTGTATACCATGCTCTCTGCTGCTGCTCCTAATCAGCAGAAACAGATACTTGCCACGTGGCCTAGAAGCAAAGATTACAGGGATGCTTTTGGAGATGAACAATGCAGAATTGCTGGTTCTCCTGGAAGCACCGGAGTCTCTTTCTGTAAAGGTGGAAGAAGCTATGAAGGTGCTTCACAACTCCAAGACCAAAGTTTCTGGACAGGATATAATACTTCATTCAAAGTACCTATCAGCTGA 1704 0.4454 MAVPSPTVTIVPASLYVGDLHPDVSEGQIFELFSEFKSLASVRVCRDTSTGKSLCYGYVNFVSPQDAIRAIELKNHAILNGKAIRVMWSRRDPGARKNNSANVFVKNLAESIDNAGLEDLFKRFGNILSSKVVMSENGKSKGYGFVQFESEESANAAIEKLNGSTVGDKQIYVDRFVKKSDCVLPGSEARYTNLYMKNLDLDITEAVLQEKFSSFGKIVSLAIAKDNKGVSKGFGFVNYDNADDAKRTLEAMNGTQFGSKIIYVARAQKKSERQQILTNQFEEKRKEKIIKYEGSNIYVKNIDDNVSDEELRDQFSSCGTITSAKIMRNSKGISKGFGFVCFSTPEEANIAVNNFHGFMFHGKPLYVALAQRKEDRQAYLQLQYAQKIAGPSTAATPGGYPPLYYAAAGVTSQVPLGAGLVYQSRALRPGWRANAYASPARSFQQSPVPVLTGQAKYVTSGHHGKMVKGSEFTSGASNYSGGSQGSEMLYTMLSAAAPNQQKQILATWPRSKDYRDAFGDEQCRIAGSPGSTGVSFCKGGRSYEGASQLQDQSFWTGYNTSFKVPIS* 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0412 567 SMART rrm2_1 102 174 IPR003954 GO:0003676
Lan19g0412 567 SMART rrm2_1 193 265 IPR003954 GO:0003676
Lan19g0412 567 SMART rrm2_1 296 368 IPR003954 GO:0003676
Lan19g0412 567 SMART rrm2_1 14 87 IPR003954 GO:0003676
Lan19g0412 567 CDD RRM1_I_PABPs 14 93 - -
Lan19g0412 567 CDD RRM2_I_PABPs 101 173 IPR045305 -
Lan19g0412 567 PANTHER RNA BINDING PROTEIN 8 466 - -
Lan19g0412 567 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 15 85 IPR000504 GO:0003723
Lan19g0412 567 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 194 262 IPR000504 GO:0003723
Lan19g0412 567 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 103 171 IPR000504 GO:0003723
Lan19g0412 567 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 297 365 IPR000504 GO:0003723
Lan19g0412 567 SMART rrm1_1 296 368 IPR000504 GO:0003723
Lan19g0412 567 SMART rrm1_1 193 265 IPR000504 GO:0003723
Lan19g0412 567 SMART rrm1_1 14 87 IPR000504 GO:0003723
Lan19g0412 567 SMART rrm1_1 102 174 IPR000504 GO:0003723
Lan19g0412 567 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 192 269 IPR000504 GO:0003723
Lan19g0412 567 PANTHER POLYADENYLATE-BINDING PROTEIN 8 466 - -
Lan19g0412 567 SUPERFAMILY RNA-binding domain, RBD 291 382 IPR035979 GO:0003676
Lan19g0412 567 SUPERFAMILY RNA-binding domain, RBD 187 276 IPR035979 GO:0003676
Lan19g0412 567 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 13 91 IPR000504 GO:0003723
Lan19g0412 567 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 101 178 IPR000504 GO:0003723
Lan19g0412 567 CDD RRM4_I_PABPs 294 372 - -
Lan19g0412 567 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 295 372 IPR000504 GO:0003723
Lan19g0412 567 SUPERFAMILY RNA-binding domain, RBD 14 179 IPR035979 GO:0003676
Lan19g0412 567 Gene3D - 97 182 IPR012677 -
Lan19g0412 567 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 13 475 IPR006515 GO:0003723
Lan19g0412 567 Gene3D - 184 277 IPR012677 -
Lan19g0412 567 Gene3D - 278 381 IPR012677 -
Lan19g0412 567 Gene3D - 9 96 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0412 Lan-Chr19 5401932 5406411 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0412 11 433 Eukaryotic Initiation Factors Gene Family AT2G36660 59.485 1.11e-180 521
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0412 K13126 - gmx:100804671 756.903