Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0405 ATGCAGTGGAATCAAATAACGAATTTTCTAGAAACCAGTTTTCTGCACTCTCTTTCTCTGCCAAAAATGGAGTTTTGGGGTGTTGAGGTAAAAAGTGGAGAATCACTCAAGGTTGATCCAGGAAATGACACGATTATCCACCTTTCGATGGCTTGTCTGGGTGAGGTCAACAAGGATAAAGGGGGTGAACCTGTATTGCTGTATGTGAAGTTTGATGACCAGAAGCTTGTACTTGGAACACTTTCTTCCGACAAGTTTCCCCAGATATCATACGATTTGATATTTGAGAAAGAATTTGAGCTATCCCATAACTGGAAACATGGGAGTGTTTTCTTTAACGGGTATCGAGCTGAAGCTCAAGTTGGATCATATCCTGTTGAAAATGATGATAATGAAGATGATGCTGATTTTCGTAAATATATTCAAGTTAGCACTGCCAATGGAGAATCTGAGGCTGACGTGAAGAACAGTGTTAAACCTGATGCAAATGAAGCTAAACAAAATGAGAAGATAGCAGACCCAATAAAGAATGAGAAGGCCAAAGAAAAGGAAGATTCATCTGATGAGTCTGACGAGGACTCTAGTGAAAACGAGCCAATGGCAAATGGTGAAATAAGAAGCAGTGAAGATGAAGATGATAGTAACGAGGAAGAGGATGATGAAGATGAATCTGATGATGAAGACGAATCTGATGACGAGGATGAATCTGAAGATGAGGAGACACCCAAGAAGGCTGAACCAAGCAATAAGAGGGCTCTTGATTCTTCTAAGAAAACACCTGTTCCAGAGAAGAAGGCGAAATTTATCACTCCTCAGAAAACTGGTGGCAAGAGTGGTAGTGGCCATGTTGATACTCCTCACCCTTCTAAGCAGGCCGGTAAGGCAGCTGTAAGTAACAACCAGCCGGCGAAGCAGCACACTCCAAAGTCGGGTGGAGAATACAGCTGCAAGCCTTGTAACAGGTCATTTAAGACAGAGGATGCCTTAGGTTCTCATAATAAGGCCAAGCACAGTGCTAAGTGA 1023 0.4233 MQWNQITNFLETSFLHSLSLPKMEFWGVEVKSGESLKVDPGNDTIIHLSMACLGEVNKDKGGEPVLLYVKFDDQKLVLGTLSSDKFPQISYDLIFEKEFELSHNWKHGSVFFNGYRAEAQVGSYPVENDDNEDDADFRKYIQVSTANGESEADVKNSVKPDANEAKQNEKIADPIKNEKAKEKEDSSDESDEDSSENEPMANGEIRSSEDEDDSNEEEDDEDESDDEDESDDEDESEDEETPKKAEPSNKRALDSSKKTPVPEKKAKFITPQKTGGKSGSGHVDTPHPSKQAGKAAVSNNQPAKQHTPKSGGEYSCKPCNRSFKTEDALGSHNKAKHSAK* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0405 340 ProSitePatterns Zinc finger C2H2 type domain signature. 316 337 IPR013087 -
Lan19g0405 340 MobiDBLite consensus disorder prediction 209 240 - -
Lan19g0405 340 ProSiteProfiles Zinc finger C2H2 type domain profile. 314 340 IPR013087 -
Lan19g0405 340 MobiDBLite consensus disorder prediction 154 186 - -
Lan19g0405 340 Pfam Nucleoplasmin-like domain 25 115 IPR041232 -
Lan19g0405 340 PANTHER HISTONE DEACETYLASE HDT3-LIKE ISOFORM X1 23 336 - -
Lan19g0405 340 PANTHER 32 KDA HEAT SHOCK PROTEIN-RELATED 23 336 - -
Lan19g0405 340 Gene3D Nucleoplasmin core domain 21 122 - -
Lan19g0405 340 MobiDBLite consensus disorder prediction 241 264 - -
Lan19g0405 340 Pfam C2H2-type zinc finger 314 338 - -
Lan19g0405 340 MobiDBLite consensus disorder prediction 292 308 - -
Lan19g0405 340 MobiDBLite consensus disorder prediction 146 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0405 Lan-Chr19 5305319 5309662 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0405 23 116 C2H2 Transcription Factor Family AT3G44750 57.447 2.29e-31 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan19g0405 NPL 1.5e-10 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0405 - - lang:109334297 600.512