Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0402 ATGGAAATGGAGAATCATCACCATCACCATCAAGAGTCACAATATGGTATTAATGATCTCAGGCAGCTAGTAAATGGACAAACCTCAACAACCCATTTTCCCTCAATACCACCACCACCACCACCCACGGCGGAGCTCTTCCCTGGCCACCCAAATCTGACTGCAGCCACCACTCACCATCAACACTATGACATGATGATGTTTGGTCGTCAAGTAGAAGAAATAATGCCTCGTTGCAGCCTTCATGACTTTGCATCCACCAATTCTGCTGCCGCAGCCGCCGCCACTGCAGCCACCGTTACTGGTGGCTTAGAGGCTGAGACTGCAGGCTTCATAGGTGGAGATGCCTCCACCGGAAGATGGCCCAGGCAGGAGACACTTACTCTTCTTGATATCAGATCTAGCTTGGACCCTAAGTTTAAAGAAGCTAATCAAAAGGGTCCTCTATGGGATGAAGTTTCTAGGATCATGTCTGAAGAACACGGATACCAAAGGAGTGGGAAAAAGTGCAGGGAGAAGTTCGAGAACTTGTACAAATATTACAAGAAGACAAAAGAAGGTAAAGCAGGACGACAAGATGGGAAGCATTACAGATTCTTTCGTCAACTTGAAGCCTTATATGGTGAAAACATTAACCAAACTTCAGTTCCAGAATCCAACTTTTGTACCAGCAGTGTTCCTTTTCATACAAGTAGTCATGCACCTTCTCAAACAAATCAAGAAATAATGTACCAGTCTCATCACAAGCATTGTGATAGCCTCAGCCTCACTAACTCCACTGACTTTGATACTTCATCTTCTGATGACAATGACCATACCACTGAAGGACTAAAGGACAATGACTCCATGCAGAAGAGGCCAAAGAGGGTGAGTGGGAGGAGTTGGAAGGTAAAGATAAAAGAGTTCATTGACTCACAGATGAGGAAGTTGGTGGAGAAGCAAGAGGAATGGATGGATAAGCTCATGAAGACAATGGAACAAAATGAAAAGGAGAGATCATTGAGAGAAGAAGAGTGGAAGAAGCAAGAGGCTGAAAGGTTAGAAAGAGAGCACAAATTTTGGGCTAAAGAGAGAACATGGATTGAAGCTAGGGATTTTGCTCTAATGGAAGCTTTGCAAAAATTAACAGGAAATGAGATTGAGTCTCAAACTCAATTATCTCTTGAAGGTATTAATGCAATTGCAACTGGAGTTCAAAACCAGAATGAAGATGGAGGAAGTGAGATACTAAATAGCACTGGTGTGAGAGGTTCTGATATCATCAGCAACAAGAAGAGAAAGGAAAACTCGAGTTGTTTTTACTTTGATGACATTAATGATCACAGGTCTAATTCTCTATATACTCAAGGAAATGGTGCCTATTGTGATATCAATGATCAAAGGCAAGAAATCAGTGAAGGGAGGCTTCAAACAAATGATGGTTCATCACCCTCAAATTCCAATGCTTGTAATGTAGTGGAAGCTGCAGATAGCTGTTTTCCCTTCTTGATGAGTGAGGGTGGGAATTTGTGGCAAAACTACAACTTAAAGGTTAACAAAGCAAATCAAAACCAAAATCAGTGA 1563 0.4223 MEMENHHHHHQESQYGINDLRQLVNGQTSTTHFPSIPPPPPPTAELFPGHPNLTAATTHHQHYDMMMFGRQVEEIMPRCSLHDFASTNSAAAAAATAATVTGGLEAETAGFIGGDASTGRWPRQETLTLLDIRSSLDPKFKEANQKGPLWDEVSRIMSEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGRQDGKHYRFFRQLEALYGENINQTSVPESNFCTSSVPFHTSSHAPSQTNQEIMYQSHHKHCDSLSLTNSTDFDTSSSDDNDHTTEGLKDNDSMQKRPKRVSGRSWKVKIKEFIDSQMRKLVEKQEEWMDKLMKTMEQNEKERSLREEEWKKQEAERLEREHKFWAKERTWIEARDFALMEALQKLTGNEIESQTQLSLEGINAIATGVQNQNEDGGSEILNSTGVRGSDIISNKKRKENSSCFYFDDINDHRSNSLYTQGNGAYCDINDQRQEISEGRLQTNDGSSPSNSNACNVVEAADSCFPFLMSEGGNLWQNYNLKVNKANQNQNQ* 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0402 520 MobiDBLite consensus disorder prediction 33 47 - -
Lan19g0402 520 Gene3D - 121 183 - -
Lan19g0402 520 MobiDBLite consensus disorder prediction 265 292 - -
Lan19g0402 520 CDD GT1 120 185 - -
Lan19g0402 520 PANTHER - 28 411 - -
Lan19g0402 520 PANTHER - 422 509 - -
Lan19g0402 520 MobiDBLite consensus disorder prediction 260 292 - -
Lan19g0402 520 ProSiteProfiles Myb-like domain profile. 113 178 IPR001005 -
Lan19g0402 520 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL 422 509 - -
Lan19g0402 520 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL 28 411 - -
Lan19g0402 520 MobiDBLite consensus disorder prediction 28 51 - -
Lan19g0402 520 Pfam Myb/SANT-like DNA-binding domain 120 206 IPR044822 -
Lan19g0402 520 Coils Coil 311 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0402 Lan-Chr19 5211012 5217094 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0402 412 513 Trihelix Transcription Factor Family AT5G03680 40.708 6.43e-08 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Lan19g0402 Myb_DNA-bind_4 1.1e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0402 - - gmx:100815903 601.668
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan19g0402 19 5211012 5217094 Lan8g1176 8 16566263 16570254 PCT
Lan19g0402 19 5211012 5217094 Lan20g1148 20 15627825 15631340 PCT
Lan8g1176 8 16566263 16570254 Lan19g0402 19 5211012 5217094 PCT
Lan20g1148 20 15627825 15631340 Lan19g0402 19 5211012 5217094 PCT