Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0401 ATGCTTAACGGGAATAACAACACTTCTGCATCAAGTTCTGCTGTTGCAGAAACTGGACGCCACCCTTTGTACCGTGGTGTGAGGCGCAGGAGCAGTGGAAAATGGGTTTCTGAAATCCGTGAACCTAAGAAACCTAATAGAATATGGTTAGGAACGTTTCCTACAGCAGAGATGGCTGCAATTGCTTATGATGTTGCTGCGCTTGCTCTTAAGGGTAGAGATGCTGAACTTAATTTCCCTAACTCGGCTTCTTCTTTACCTGTTCCTGCTTCTTCTGCTGCTCGCGATATTCAGATGGCTGCAGCTAGTGCTGCAGCTGCTATCGGGGCAGCGAAAGATGCTCTATCAGGTGGTGAAGGAAGCCGAGGAGGGAATGTTTCAGTGTCACAAGAGATCAATATGGCTTCCGGAAATGGGTTTGTTGATGAAGATTTAATCTTTGATATGCCAAATGTTTTGGTTAATATGGCTGAGGGAATGTTGCTTAGTCCTCCTCGTTTTGATGTTGGTGGTGGTGACTTTGTTGACTATACTACACAGGAAAACATAGGGGAAGATCCAAATCTATGGAGTTTCCCTTATTTCCAATATCCATAA 597 0.4456 MLNGNNNTSASSSAVAETGRHPLYRGVRRRSSGKWVSEIREPKKPNRIWLGTFPTAEMAAIAYDVAALALKGRDAELNFPNSASSLPVPASSAARDIQMAAASAAAAIGAAKDALSGGEGSRGGNVSVSQEINMASGNGFVDEDLIFDMPNVLVNMAEGMLLSPPRFDVGGGDFVDYTTQENIGEDPNLWSFPYFQYP* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0401 198 SUPERFAMILY DNA-binding domain 23 82 IPR016177 GO:0003677
Lan19g0401 198 PRINTS Ethylene responsive element binding protein signature 24 35 IPR001471 GO:0003700|GO:0006355
Lan19g0401 198 PRINTS Ethylene responsive element binding protein signature 46 62 IPR001471 GO:0003700|GO:0006355
Lan19g0401 198 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 7 193 - -
Lan19g0401 198 MobiDBLite consensus disorder prediction 1 16 - -
Lan19g0401 198 Gene3D AP2/ERF domain 23 81 IPR036955 GO:0003700|GO:0006355
Lan19g0401 198 CDD AP2 22 82 IPR001471 GO:0003700|GO:0006355
Lan19g0401 198 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF024 7 193 - -
Lan19g0401 198 ProSiteProfiles AP2/ERF domain profile. 23 80 IPR001471 GO:0003700|GO:0006355
Lan19g0401 198 Pfam AP2 domain 22 72 IPR001471 GO:0003700|GO:0006355
Lan19g0401 198 MobiDBLite consensus disorder prediction 1 23 - -
Lan19g0401 198 SMART rav1_2 23 86 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0401 Lan-Chr19 5149161 5150269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0401 19 193 AP2-EREBP Transcription Factor Family AT2G36450 62.431 2.40e-57 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lan19g0401 AP2 2.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0401 - - gmx:100799620 233.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0282 5 3925827 3926390 Lan19g0401 19 5149161 5150269 LSH
Lan19g0401 19 5149161 5150269 Lan20g1147 20 15501655 15502516 PCT