Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0389 ATGCCAGCACAGAAGCAACGCTCCAACGAGACTCCTGAGGAGGATTTGCTCACTACCGTCGATAATAACAATGAGGTTCCAGTTGATGAATTCGAATCTGATCGAAACCATTCTTCGAGCAACGGGGACAAGAAAGAATATGTGATTATAAACTTGGCCGATGTACGCAAAGAAGTTCAGTGTCCTATCTGCCTAGGAATCATTCGAAAAACAAGAACTGTAATGGAATGCCTACATCGCTTTTGCAGAGAGTGCATAGACAAATCTATGCGCCTTGGTAACAATGAATGTCCTGCTTGCCGCACACATTGTGCTAGCCGGCGCTCATTGAGAGATGACCCTAACTTTGATACTCTGATTGCTGCTCTCTATCCTGATATTGACAAGTATGAAGAAGAGGAATTGGCTTTGCATGAAGATGAGAAGACACAGAATAAGCTGATCCAGGATTCCATTGCTCGGACTTTTCAACGACAAACAGAAGCATTGGGTAAGAGACGGAATGCCAAAGCAACAGCGGTGGCTTTTGCAAGGAGATCACAAGGTAACTATCAAACTTCACATCTGAGAAGAAAGAGAAACATTAGAAATGGAGGTGAATTTCAGGTATCCAATGGCAGTGAGGATATGAATAGTAATGGTGAGGGAAAGGACTCATCTTCTGGTGATGAGGAGGCAGAAACCAAGCCAAAAAGAGGCAAAAGAGGGGCAGAAACCCGATTTCCTCAGCATTTTGCTACTACTAATGCATATGCAGCTGTTGATGAAAATATTCCTGAGTTGAGTAAAGAGATCATAAGTTCGTCTAGTGCACTTGCTTGGGGGAAAAATGGCCACCGCAGTCACAATCGGGTCAATGGTAAGAATGCCAGAAACAGTCGCCTCTACAGACTGGCTGATCATCTGCGTAATTCAGAAATAACTGACGACGAGTTGGATATCAATATCATGGTTGTCTCTTTGGATGAGGAAAGCATACCAAGTATGGAACGGCCATATCTTCGCTGCAAGTCTACTTTCTCAGTCAGTCTACTGTGCCAGTATGTTGCACTTCAAGCTGCTGTGCAGGCTGATAAAGTTGAATTATTCTTAGTAAAAGATCCGCAAGCCAACATCATACGAGGTGAACGACTAGTTGATGCAGACAAGGATGAGTTGCATTTTCTAAGCGAAGGAAGAACTTTGGCTGAACTGAAAATATATGATAATCTCTGCCTTGACTATCTGGTCATGGCTTATAAAGCAAATTGCAGGACTCGAGACACAGTTGAGCTGAGCTGA 1281 0.434 MPAQKQRSNETPEEDLLTTVDNNNEVPVDEFESDRNHSSSNGDKKEYVIINLADVRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNFDTLIAALYPDIDKYEEEELALHEDEKTQNKLIQDSIARTFQRQTEALGKRRNAKATAVAFARRSQGNYQTSHLRRKRNIRNGGEFQVSNGSEDMNSNGEGKDSSSGDEEAETKPKRGKRGAETRFPQHFATTNAYAAVDENIPELSKEIISSSSALAWGKNGHRSHNRVNGKNARNSRLYRLADHLRNSEITDDELDINIMVVSLDEESIPSMERPYLRCKSTFSVSLLCQYVALQAAVQADKVELFLVKDPQANIIRGERLVDADKDELHFLSEGRTLAELKIYDNLCLDYLVMAYKANCRTRDTVELS* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0389 426 ProSiteProfiles Zinc finger RING-type profile. 61 101 IPR001841 -
Lan19g0389 426 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 130 IPR013083 -
Lan19g0389 426 PANTHER OS11G0578200 PROTEIN 1 415 IPR044592 -
Lan19g0389 426 MobiDBLite consensus disorder prediction 198 217 - -
Lan19g0389 426 MobiDBLite consensus disorder prediction 1 42 - -
Lan19g0389 426 SUPERFAMILY RING/U-box 47 132 - -
Lan19g0389 426 Pfam Zinc finger, C3HC4 type (RING finger) 60 100 - -
Lan19g0389 426 MobiDBLite consensus disorder prediction 161 242 - -
Lan19g0389 426 MobiDBLite consensus disorder prediction 218 239 - -
Lan19g0389 426 MobiDBLite consensus disorder prediction 28 42 - -
Lan19g0389 426 ProSitePatterns Zinc finger RING-type signature. 77 86 IPR017907 -
Lan19g0389 426 PANTHER OS11G0578200 PROTEIN 1 415 - -
Lan19g0389 426 CDD RING-HC_RING1_like 61 101 - -
Lan19g0389 426 SMART ring_2 61 100 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0389 Lan-Chr19 4901705 4909262 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0389 52 125 C3H Transcription Factor Family AT2G30580 34.146 2.20e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0389 K10695 - zju:107425269 461.455