Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0385 ATGAAGTTCAACATCGCAAACCCCACCACTGGATGCCAGAAGAAGCTGGAAATCGATGATGACCTTAAGCTCCGGGCATTTTGGGACAAGAGGATCTCACAGGAAGTACTTGGTGATGCTCTAGGCGAGGAATTCAAAGGATATGTCTTCAAGATCACTGGAGGATGTGACAAACAAGGATTCCCAATGAAGCAGGGAGTGTTGACCCCTGGCCGTGTCCGTCTTTTGCTTCACAGAGGGACACCTTGTTTCCGTGGATACGGAAGGCGTACAGGAGAACGTAGGAGAAAGTCTGTTCGTGGTTGCATTGTCAGCCCAGACCTGTCTGTTTTGAATTTGGTTATTGTGAAGAAGGGTGATAATGATTTACCTGGGTTGACTGACATTGAGAAGCCAAGGATGAGGGGTCCAAAGAGAGCATCTAAAATCCGCAAGCTGTTCAACCTGTCCAAGGAGGATGATGTGAGGAAGTATGTTAACACTTACCGTCGAACCTTTACAACTAAAAATGGGAAAAAGGTGAGCAAAGCACCCAAGATTCAACGACTGGTCACTCCTTTGACACTCCAAAGGAAGCGAGCAAGAATTGCAGATAAAAAGAAGAGAATTGCGAAGGCAAAATCCGATGCAGCTGAGTATCAAAAGCTCCTTGCTTCCAGGTTGAAGGAGCAGAGGGAACGTCGTAGTGAGAGTTTGGCAAAGAAGAGATCTAGACTTTCCAGTGCCACCAAGCCATCTGTCACCGCATAA 750 0.468 MKFNIANPTTGCQKKLEIDDDLKLRAFWDKRISQEVLGDALGEEFKGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGDNDLPGLTDIEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKNGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSDAAEYQKLLASRLKEQRERRSESLAKKRSRLSSATKPSVTA* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0385 249 PANTHER 40S RIBOSOMAL PROTEIN S6 1 249 - -
Lan19g0385 249 PANTHER 40S RIBOSOMAL PROTEIN S6 1 249 IPR001377 GO:0003735|GO:0005840|GO:0006412
Lan19g0385 249 Coils Coil 189 216 - -
Lan19g0385 249 MobiDBLite consensus disorder prediction 222 237 - -
Lan19g0385 249 PIRSF RPS6e 1 249 IPR014401 GO:0003735|GO:0005840|GO:0006412
Lan19g0385 249 Pfam Ribosomal protein S6e 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
Lan19g0385 249 SMART Ribosomal_S6e_2 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
Lan19g0385 249 ProSitePatterns Ribosomal protein S6e signature. 52 63 IPR018282 GO:0003735|GO:0005840|GO:0006412
Lan19g0385 249 MobiDBLite consensus disorder prediction 222 249 - -
Lan19g0385 249 Gene3D - 133 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0385 Lan-Chr19 4833294 4836117 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0385 1 249 Cytoplasmic Ribosomal Protein Gene Family AT5G10360 73.092 7.74e-121 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0385 K02991 - gmx:100786559 439.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan19g0385 19 4833294 4836117 Lan16g0149 16 1170377 1172674 LSH
Lan6g0729 6 6632653 6634897 Lan19g0385 19 4833294 4836117 PCT
Lan19g0385 19 4833294 4836117 Lan6g0729 6 6632653 6634897 PCT