Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0380 ATGGCGATAGAAAGCATGGAACTGAAAGAGATTCAAACACTTGAAGGTCACACCGATAGGGTTTGGAGCTTAGATTGGAACCCTGCTACCGGTCACTCCGGTATCCCTCTCCTCTTCGCTTCTTGCAGCGGCGACAAAACCGTCCGCGTCTGGGAACAAAATACCCTCTCCTCCAACCTCTTTACCTGCAAAGCCGTTTTGGATGAAACGCACACTCGAACTGTTCGATCTTGTGCTTGGTCACCATCTGGAAAACTCTTAGCCACTGCGAGTTTCGATGCCACTACTGCGATATGGGAGAATGTTGGAGGTGATTTTGAATGTGTTTCTACTCTAGAGGGTCATGAGAATGAAGTGAAGTGTGTCTGTTGGAATGCTTCTGGAAATTTGCTTGCGACATGTAGTAGAGATAAATCGGTTTGGATATGGGAAGTGGAGCAAGGGAATGAGGTTGAGTGTGTTTCTGTGCTCCAAGGACATACTCAGGATGTTAAAATGGTGAAGTGGCATCCCACTATGGATGTGTTGTTTTCATGTAGCTATGATAATACCGTTAAGGTTTGGGCAGATGAAGGTGAGAGTGATGATTGGCAGTGTGTTCAAACCTTAGGAGAACCCAATAACGGTCATACTTCTACTGTTTGGGCCATCTCCTTTAATGCTAGTGGAGACAAAATGGTTACCTGTAGTGATGATCTTACCTTGAAGGTATGGGAAACAGCAAACATAGGGATTCAATCTGGTGGTCAATTTGCACCTTGGAGACATCTTTGCACTCTTACAGGTTATCATGATCGGACGATTTTCTCTGTTCATTGGTCAAGAGAAGGTATCCTTGCTAGTGGAGCTGCTGATGATGCTATACGCCTTTTTGTGGATAACAATGAAAGTGAGGTTGGTGGTCCTCTGTTCAAGCTGCTTTCGAAGAAGGAGAAAGCCCATGGCATGGATATAAATTGTGTCCAGTGGAGCCCTGGGGAGAAGCCACTACTTGCCTCTGCCAGTGATGATGGGACAATCAAGGTTTGGGAGCTGACATCATAG 1044 0.4569 MAIESMELKEIQTLEGHTDRVWSLDWNPATGHSGIPLLFASCSGDKTVRVWEQNTLSSNLFTCKAVLDETHTRTVRSCAWSPSGKLLATASFDATTAIWENVGGDFECVSTLEGHENEVKCVCWNASGNLLATCSRDKSVWIWEVEQGNEVECVSVLQGHTQDVKMVKWHPTMDVLFSCSYDNTVKVWADEGESDDWQCVQTLGEPNNGHTSTVWAISFNASGDKMVTCSDDLTLKVWETANIGIQSGGQFAPWRHLCTLTGYHDRTIFSVHWSREGILASGAADDAIRLFVDNNESEVGGPLFKLLSKKEKAHGMDINCVQWSPGEKPLLASASDDGTIKVWELTS* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0380 347 CDD WD40 10 344 - -
Lan19g0380 347 ProSitePatterns Trp-Asp (WD) repeats signature. 131 145 IPR019775 -
Lan19g0380 347 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 14 52 - -
Lan19g0380 347 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 311 347 - -
Lan19g0380 347 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 112 149 - -
Lan19g0380 347 SUPERFAMILY WD40 repeat-like 6 343 IPR036322 GO:0005515
Lan19g0380 347 PANTHER CYTOSOLIC IRON-SULFUR PROTEIN ASSEMBLY PROTEIN CIAO1 HOMOLOG-RELATED 4 347 - -
Lan19g0380 347 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 157 188 - -
Lan19g0380 347 ProSiteProfiles Trp-Asp (WD) repeats profile. 311 347 IPR001680 GO:0005515
Lan19g0380 347 Gene3D - 37 347 IPR015943 GO:0005515
Lan19g0380 347 ProSiteProfiles Trp-Asp (WD) repeats profile. 112 153 IPR001680 GO:0005515
Lan19g0380 347 PANTHER WD40 PROTEIN CIAO1 4 347 IPR028608 GO:0016226|GO:0097361
Lan19g0380 347 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 68 100 - -
Lan19g0380 347 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 207 239 - -
Lan19g0380 347 ProSiteProfiles Trp-Asp (WD) repeats profile. 14 52 IPR001680 GO:0005515
Lan19g0380 347 ProSiteProfiles Trp-Asp (WD) repeats profile. 68 100 IPR001680 GO:0005515
Lan19g0380 347 ProSiteProfiles Trp-Asp (WD) repeats profile. 207 239 IPR001680 GO:0005515
Lan19g0380 347 Pfam WD domain, G-beta repeat 197 238 IPR001680 GO:0005515
Lan19g0380 347 Pfam WD domain, G-beta repeat 152 188 IPR001680 GO:0005515
Lan19g0380 347 Pfam WD domain, G-beta repeat 312 343 IPR001680 GO:0005515
Lan19g0380 347 Pfam WD domain, G-beta repeat 9 51 IPR001680 GO:0005515
Lan19g0380 347 Pfam WD domain, G-beta repeat 107 143 IPR001680 GO:0005515
Lan19g0380 347 Pfam WD domain, G-beta repeat 66 99 IPR001680 GO:0005515
Lan19g0380 347 ProSitePatterns Trp-Asp (WD) repeats signature. 331 345 IPR019775 -
Lan19g0380 347 PRINTS G protein beta WD-40 repeat signature 39 53 IPR020472 -
Lan19g0380 347 PRINTS G protein beta WD-40 repeat signature 131 145 IPR020472 -
Lan19g0380 347 PRINTS G protein beta WD-40 repeat signature 331 345 IPR020472 -
Lan19g0380 347 ProSiteProfiles Trp-Asp (WD) repeats profile. 157 188 IPR001680 GO:0005515
Lan19g0380 347 Hamap Probable cytosolic iron-sulfur protein assembly protein CIAO1 [CIAO1]. 6 347 IPR028608 GO:0016226|GO:0097361
Lan19g0380 347 SMART WD40_4 196 239 IPR001680 GO:0005515
Lan19g0380 347 SMART WD40_4 7 52 IPR001680 GO:0005515
Lan19g0380 347 SMART WD40_4 303 344 IPR001680 GO:0005515
Lan19g0380 347 SMART WD40_4 60 100 IPR001680 GO:0005515
Lan19g0380 347 SMART WD40_4 150 189 IPR001680 GO:0005515
Lan19g0380 347 SMART WD40_4 105 144 IPR001680 GO:0005515
Lan19g0380 347 SMART WD40_4 253 292 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0380 Lan-Chr19 4706283 4711238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0380 83 347 U-box Gene Family AT2G33340 26.415 2.12e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0380 K24730 - gmx:100778826 645.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g1100 5 24283075 24287138 Lan19g0380 19 4706283 4711238 LSH