Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0375 ATGACTGGAACAAGACAGAGACAAAATCCAGAATCACCAGAGGGGAACAGTGAGCATGAGAAACCTACAGATTTTGATGAGCAGGTAGACCTTGATGGGGACAATGATCAAGAAGAAGAGGAGGAGGAAGAAGTTGAGTATGAAGAAGTAGAGGTGGAGGAAGAAGTGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGAAGAAGAAGAGGAAGAGATGAAGGATGATAAAGAGGAGATGAGTGTGCCTGATACTAAGGATGAAGATGAGAAAAAGAAACATGCTGAATTTCTCGCTCTTCCACCACATGGGTCAGAGGTCTACCTTGGTGGCATTCCTTACAAAATTTCTGAAGAAGATTTGAGGGATTTTTGTCAATCTGTCGGAGAAGTGTCAGAGGTTAGGATTATGAAGGGAAAAGATTCAGGTGAAACAAAAGGTTATGCTTTTGTTACCTTCAAGACAAAGGAATTGGCTTCTAAAGCTATTGAGAAGCTGAACAACACTGAATTTAAGGGAAAAAAGTTGAAATGTTCAACAGCTCAAGCTAAGCATAAGTTGTTCATTGGTAATGTTCCTAGAAATTGGACAGTAGAAGATTTGAAAAAAGTTGTTGCAGGGATTGGGCCTGGAGTCATTTCTGTGGAACTGTTGAAGGATCCACAGAATTCTGGTCGTAATAGGGGATTTGCTTTTATTGAGTATTACAATAATGCTTGTGCAGAATATTCACGGCAGAAGATGTCAGACTCAAAATTTAAACTTGACAACAATGCTCCAACGGTGAGCTGGGCCGACCCAAGGAATTCTGAATCGCCAGCATCATCCCAGGTAAAATCGGTGTACATAAAGAACCTTCCAGAAAACATTACTCAGGATCGTCTTAAGGAGCTGTTTGAACATCACGGGAAGATCACAAAAGTGGTTCTCCCTCCTGCAAAAGCAGGACAAGAGAAGAGCAGATTTGGTTTTGTGCACTTTGCTGAAAGGTCAAGTGCCATGAAAGCATTGAAGAATACAGAGAAATATGAAATTAATGGCCAAGCTTTGGAGTGTTCACTTGCAAAGCCACAAGCAGACCAGAGGTCATCTGGGGCATCAAACTCACAGAAGCCAGTTGCACCCCCCACTTATCCACCTTATCATGGTTATGGCATGGTTGGAGCCGGTGCCTATAATGCTTTTGGTGCAGGATATGGTGCTGCTGGTTTCACACAACCGCTGATGTATGGTGCGGGAGCTCCCCCTGCTGGCATGGCAATGATGCCAATGCTTTTACCGGACGGAAGGATTGGATATGTATTGCAACAGCCAGCATTGCAACCGCACACTCCTACTCCCGCATCCCGACACAGCAGGAATGGTGGTGGTAGCTCAAGTGGTGGGAAACGCAGTAATGATAGTAACCATAATAACCATAACCGTGGGCGTGGTCGATTTCATCCCTACTAA 1455 0.4426 MTGTRQRQNPESPEGNSEHEKPTDFDEQVDLDGDNDQEEEEEEEVEYEEVEVEEEVEEEEEEEEEEEEEEEEEMKDDKEEMSVPDTKDEDEKKKHAEFLALPPHGSEVYLGGIPYKISEEDLRDFCQSVGEVSEVRIMKGKDSGETKGYAFVTFKTKELASKAIEKLNNTEFKGKKLKCSTAQAKHKLFIGNVPRNWTVEDLKKVVAGIGPGVISVELLKDPQNSGRNRGFAFIEYYNNACAEYSRQKMSDSKFKLDNNAPTVSWADPRNSESPASSQVKSVYIKNLPENITQDRLKELFEHHGKITKVVLPPAKAGQEKSRFGFVHFAERSSAMKALKNTEKYEINGQALECSLAKPQADQRSSGASNSQKPVAPPTYPPYHGYGMVGAGAYNAFGAGYGAAGFTQPLMYGAGAPPAGMAMMPMLLPDGRIGYVLQQPALQPHTPTPASRHSRNGGGSSSGGKRSNDSNHNNHNRGRGRFHPY* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0375 484 MobiDBLite consensus disorder prediction 356 376 - -
Lan19g0375 484 Coils Coil 35 81 - -
Lan19g0375 484 SUPERFAMILY RNA-binding domain, RBD 274 381 IPR035979 GO:0003676
Lan19g0375 484 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 282 351 IPR000504 GO:0003723
Lan19g0375 484 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 188 255 IPR000504 GO:0003723
Lan19g0375 484 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 178 IPR000504 GO:0003723
Lan19g0375 484 MobiDBLite consensus disorder prediction 12 28 - -
Lan19g0375 484 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 186 268 IPR000504 GO:0003723
Lan19g0375 484 Gene3D - 187 267 IPR012677 -
Lan19g0375 484 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 184 IPR000504 GO:0003723
Lan19g0375 484 MobiDBLite consensus disorder prediction 29 78 - -
Lan19g0375 484 MobiDBLite consensus disorder prediction 441 484 - -
Lan19g0375 484 Gene3D - 27 186 IPR012677 -
Lan19g0375 484 SMART rrm2_1 107 180 IPR003954 GO:0003676
Lan19g0375 484 SMART rrm1_1 187 264 IPR000504 GO:0003723
Lan19g0375 484 SMART rrm1_1 281 354 IPR000504 GO:0003723
Lan19g0375 484 SMART rrm1_1 107 180 IPR000504 GO:0003723
Lan19g0375 484 PANTHER - 9 482 - -
Lan19g0375 484 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 280 358 IPR000504 GO:0003723
Lan19g0375 484 SUPERFAMILY RNA-binding domain, RBD 103 270 IPR035979 GO:0003676
Lan19g0375 484 CDD RRM_SF 108 180 - -
Lan19g0375 484 PANTHER GEO13361P1-RELATED 9 482 - -
Lan19g0375 484 MobiDBLite consensus disorder prediction 79 93 - -
Lan19g0375 484 Gene3D - 269 399 IPR012677 -
Lan19g0375 484 MobiDBLite consensus disorder prediction 441 468 - -
Lan19g0375 484 MobiDBLite consensus disorder prediction 1 93 - -
Lan19g0375 484 MobiDBLite consensus disorder prediction 358 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0375 Lan-Chr19 4600376 4604758 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0375 108 443 Eukaryotic Initiation Factors Gene Family AT4G34110 26.933 1.74e-17 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0375 K13161 - gmx:100798476 625.935