Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0351 ATGGGGACATACTATCATGGTAATTCTGAAATCCAAGGTGCTAGTGCTGATGGACTTCAAACACTAGTTCTCATGAATCCTGGCTATATCCACTACTCTGACGCGCCGCCGCAGACACCACTTTCTCATTCCCCCAGCAACCTTGTTTTCCTCAACAACAATAATAACAACAACTTCAACCCTCACGCGCCACCACCACCCTCTCACCACACACAACAATTTGTTGGCATCCCTCTCTCCGCCACAGCTGCTTCCTCACAAGACCTTAACCACCACTCCTTGCACCCCCACCACCATGATGTGTCGGCTTTGCATGGCTTCATGTCGCCTCGCATGCAGTACAACCTTTGGAACACAATTGACCCCAACTCGACGGCGCGTGAAACTCCACGCGCTCAGCAGGGACTGTCCCTGAGTCTTTCTTCCCAGCAGGCTGGGTTCGGGTCATTCCTGGTAGACCGTGACATCCCACCGACGCAGGGTCAGGCGACGGCTATGTCTAGCGATGATATTCGCGGCGGCTCGCCCTCACCGGGAACCATGAATGGTGGCGCTACAAGCATTCAAAGTGTACTACTGAGTTCAAAGTATTTGAATGCAGCACATGAGCTTTTGGATGAGGTGGTGAATGTGAACAATGGTATTAATAATGAATTGGCAAAGAAGAGTGGTGGTGGTGGTGGTGGGAACAAGGTGGTTGGAGAGTGTTCTGGTGCAGTTAGTGGAGAAGGTGGTGGTTCAATTGGTGGAGAGAATAGTGGGAAACGTAGCACTGATTTATCAAATGCAGAAAGACAAGAAATTCAGATGAAGAAGGCTAAGCTAATCAGCATGCTTGATGAGGTGGAACAAAGGTATAGACAATACCATCACCAAATGGAGATTGTAGTTTCCTCATTTGAACAAGCTGCAGGGATTGAATCAGCAAGAACTTACACTTCTCTTGCATTGCAAACAATTTCGAGGCAATTTCGGTGTTTGAAAGATGCCATAACATGTCAAATTCGAGCTGCGAATAAGAGCTTAGGAGAAGAAGATTGCTTTGGAGGTAAAATTGAAGGTTCTAGGCTCAAATATGTAGACAATCATCTAAGGCAACAAAGAACTCTTCAACAATTGGGTATGATCCAACACAATGCTTGGAGACCCCAGAGAGGTTTGCCAGAAAGATCAGTTTCTGTTCTTCGTGCTTGGCTCTTCGAACATTTTCTCCATCCCTATCCCAAGGATTCAGATAAACACATGCTTGCAAAACAAACAGGACTTACCAGGAGCCAAGTTTCAAATTGGTTTATAAATGCTCGAGTTCGGCTTTGGAAGCCAATGGTAGAAGAAATGTACATGGAGGAGATGAAGGAGAATGAACAGAATAATGGTTCTGATGAAAAATCAAGCAAGAGCAATGAAGACAAAGGACCAAGCAATGAAAATGAACCTAAAAACTTCAATCCCAAACATGTTTCTAAGAGCCAGAACAACCCAATAGTTTCAGTTGAGGAAAGTGTTAGAAACCAATCAGGACTCAGCTTCAATATTGGGTCATCAGAGCTAGATGGTATCACACAACAAAGTCCTAAGAAAGCTAGGAACCATGAAATTATGCATTCACCAAATAGTGTTCCTTCAATGAACATAGATATCAAGCCCAATGAGCAGATTTCAATGAAATTTGGTGACGAAAGACAAGGCAGAGATGAGTACTCTTTTATGGGAAACCAAACAAACTTCATTGGTGGTTTTGGACAATACCCTATTGGTGATATTGGTAGGTTTGATGCAGAACAATTTACTCCAAGGTTTCAAGGTAATGGTGTTTCACTCACACTTGGTCTTGATTCCTTACCAGGAACACATCAAAATTTTCTACCAAACCAAAGCATTCAACTTGGAAGAAGCATGGATATTAGTGAACCAAATGAGTTTGGTGCAATAAACACTTCCCCTTCTCATTCTAATGCTGCATTTGAGAATATCAACATGCAAAACCCAAAGAGGTTTGAAGCACAATTGTTGCCAGATTTTGTGGCCTAA 2031 0.4362 MGTYYHGNSEIQGASADGLQTLVLMNPGYIHYSDAPPQTPLSHSPSNLVFLNNNNNNNFNPHAPPPPSHHTQQFVGIPLSATAASSQDLNHHSLHPHHHDVSALHGFMSPRMQYNLWNTIDPNSTARETPRAQQGLSLSLSSQQAGFGSFLVDRDIPPTQGQATAMSSDDIRGGSPSPGTMNGGATSIQSVLLSSKYLNAAHELLDEVVNVNNGINNELAKKSGGGGGGNKVVGECSGAVSGEGGGSIGGENSGKRSTDLSNAERQEIQMKKAKLISMLDEVEQRYRQYHHQMEIVVSSFEQAAGIESARTYTSLALQTISRQFRCLKDAITCQIRAANKSLGEEDCFGGKIEGSRLKYVDNHLRQQRTLQQLGMIQHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYMEEMKENEQNNGSDEKSSKSNEDKGPSNENEPKNFNPKHVSKSQNNPIVSVEESVRNQSGLSFNIGSSELDGITQQSPKKARNHEIMHSPNSVPSMNIDIKPNEQISMKFGDERQGRDEYSFMGNQTNFIGGFGQYPIGDIGRFDAEQFTPRFQGNGVSLTLGLDSLPGTHQNFLPNQSIQLGRSMDISEPNEFGAINTSPSHSNAAFENINMQNPKRFEAQLLPDFVA* 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0351 676 MobiDBLite consensus disorder prediction 451 492 - -
Lan19g0351 676 MobiDBLite consensus disorder prediction 509 527 - -
Lan19g0351 676 SUPERFAMILY Homeodomain-like 382 448 IPR009057 -
Lan19g0351 676 CDD homeodomain 381 441 IPR001356 GO:0003677
Lan19g0351 676 SMART HOX_1 381 445 IPR001356 GO:0003677
Lan19g0351 676 MobiDBLite consensus disorder prediction 243 262 - -
Lan19g0351 676 MobiDBLite consensus disorder prediction 509 545 - -
Lan19g0351 676 MobiDBLite consensus disorder prediction 451 476 - -
Lan19g0351 676 ProSiteProfiles 'Homeobox' domain profile. 378 441 IPR001356 GO:0003677
Lan19g0351 676 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 6 626 - -
Lan19g0351 676 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 5 6 626 - -
Lan19g0351 676 Coils Coil 265 285 - -
Lan19g0351 676 Pfam Associated with HOX 191 332 IPR006563 -
Lan19g0351 676 MobiDBLite consensus disorder prediction 477 492 - -
Lan19g0351 676 SMART prehox3 186 333 IPR006563 -
Lan19g0351 676 Pfam Homeobox KN domain 398 437 IPR008422 GO:0003677|GO:0006355
Lan19g0351 676 Gene3D - 384 463 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0351 Lan-Chr19 4285454 4291222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0351 1 676 Homeobox Transcription Factor Family AT2G35940 50.543 2.47e-171 504
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Lan19g0351 POX 2.8e-46 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0351 - - lang:109348289 1011.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g1073 5 24022956 24028449 Lan19g0351 19 4285454 4291222 LSH