Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0349 ATGATGAACATGAGTGATGAAATTGATGTTCCACCATTCTTTCTATGCCCTATATCATTAGAAATAATGAAGGATCCAGTGACTATCTCCACTGGCATCACCTATGACCGAGAGAGCATAGAAAAATGGGTATTCTCTGGAAAAAACAAGACATGTCCGGTTACCAAACAACCCTTATCAGATTTCATTGATCTCACTCCAAACCACACCCTCCGAAGACTTCTTCAAGCATGGTGTACAATGAATGCTTCTCATGGAATAGAGAGAATTCCAACACCAAAACCTCCTATCAACAAAATCCAAATAACCAAGATCCTCAAAGATGCTTATCTTTCACCTCATTTGCAGATTAAATCTCTTAGAAAACTCAAATCCATCGCTTCCGGTAGTGAAACCAATAAACGTTGCATGGAAGATGCAGGTGCTGTCGAATTCTTAGCATCAGTTATAAAAAACAACGTCCACAACAATGATTCTTCAAGTGCAGAAGATGAAGCCTTAAGTGTTCTTCATGATCTTCATGTATCTGAAGCTGGATTGAAGAGTCTCCTAGGCTTTAAAAATGGAGAGTTTATTCAGTCATTAACAAGGGTTATGCAAAAGGGTATTTATGAGTCACGAGTTTATGCAGTGTTCTTGTTGAAATCAATGTCTGAAGTGGCAGAACCAGTGCACTTGTTCCATCTAAGCACCGAGTTGTTCATGGAGTTAGTGCATGTCATAAAGGATCAGATTTCACAGAAGGCATCAAAAGCAACACTTCAGACACTGATACAAATGTGTCCTTGGGGCAGAAACAGGATCAAAGCTGTGGAAGCAGGTGCTGTTTCTGTTCTAATAGAGCTTCTTCTTGATTGTAAAGACAGAAAGCCTTGTGAGATGATGCTTGTGCTGTTGGAGTCTCTATGCCAGTGTGCTGAAGGAAGGGCTGAATTATTGAGCCATGGTGCAGGACTAGCCATAGTGTCCAAAAAGATTCTGAGGGTTTCAACTTTGGCAAATGATAGAGCTGTGAGGATTTTGTTGGCTGTTTCTAGATTCTCAGCAACTCCTAGTGTTGTTCAAGAAATGCTGAAACTTGGTGTGGTAACAAAGCTTTGTTTGATGCTTCAAGTGGATAGTGGTAACAAGGCCAAGGAGAAAGCAAGAGAGATACTCAAACTTCATGCTCGGGTATGGAGGGATTCTCCATGCATACCTAGCAGTTTGCTTTCTTCATACCCAGCTTATGTGTGA 1236 0.4078 MMNMSDEIDVPPFFLCPISLEIMKDPVTISTGITYDRESIEKWVFSGKNKTCPVTKQPLSDFIDLTPNHTLRRLLQAWCTMNASHGIERIPTPKPPINKIQITKILKDAYLSPHLQIKSLRKLKSIASGSETNKRCMEDAGAVEFLASVIKNNVHNNDSSSAEDEALSVLHDLHVSEAGLKSLLGFKNGEFIQSLTRVMQKGIYESRVYAVFLLKSMSEVAEPVHLFHLSTELFMELVHVIKDQISQKASKATLQTLIQMCPWGRNRIKAVEAGAVSVLIELLLDCKDRKPCEMMLVLLESLCQCAEGRAELLSHGAGLAIVSKKILRVSTLANDRAVRILLAVSRFSATPSVVQEMLKLGVVTKLCLMLQVDSGNKAKEKAREILKLHARVWRDSPCIPSSLLSSYPAYV* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0349 411 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 89 IPR013083 -
Lan19g0349 411 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 6 408 - -
Lan19g0349 411 ProSiteProfiles U-box domain profile. 9 85 IPR003613 GO:0004842|GO:0016567
Lan19g0349 411 SMART Ubox_2 13 78 IPR003613 GO:0004842|GO:0016567
Lan19g0349 411 PANTHER WDSAM1 PROTEIN 6 408 IPR045185 GO:0061630
Lan19g0349 411 Gene3D - 101 397 IPR011989 -
Lan19g0349 411 SUPERFAMILY ARM repeat 103 386 IPR016024 -
Lan19g0349 411 SUPERFAMILY RING/U-box 7 86 - -
Lan19g0349 411 CDD RING-Ubox_PUB 14 57 IPR045210 -
Lan19g0349 411 Pfam U-box domain 10 82 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0349 Lan-Chr19 4258325 4259939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0349 4 408 U-box Gene Family AT2G35930 58.435 5.25e-178 500
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0349 - - gmx:100811258 640.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g0360 9 5446331 5448207 Lan19g0349 19 4258325 4259939 LSH
Lan5g0308 5 4792408 4794015 Lan19g0349 19 4258325 4259939 LSH
Lan9g0360 9 5446331 5448207 Lan19g0349 19 4258325 4259939 PCT