Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0348 ATGAATGACCTATTATCAACCTCATTTCCTCACGGCCAACCTTCGCCGGAACACCACACAATCGAGATGAACTCCGGTGGAGCAAATCTCGACAAATTCTTCTCCGACGTGGAGGCGATCAAGGAGGAGCTGACGGAGCTAGAAAGCCTCCGGCAAAGGCTAAAAACCTCTAACGAAAACAGCAAGACGCTTCACAATGCCACTGCGGTGAAGAATCTCCGGTCCCAAATGGACGCTGATGTTGGACTCGCTCTAAAGAAAGCGAAGGTGGTTAAGCTTAAGCTCGAGGCTTTGGACCGGTCCAACGCTGCGAACCGGAGTGTGCTTGGTTGTGGACCCGGTTCTTCGTCGGACCGGACCAGGAGTTCGGTGGTGAACGGGTTGAAGAAGAAGCTGAAGGAGTCTATGGATAGCTTTAATGAGCTCCGGCAACAGATTTCGTCGGAATATCGTGAAACGGTGCAACGCCGGTATTTCACTGTTACCGGCGATAATCCTGATGAGAAAACCCTAGACCTTTTGATCTCTTCAGGTGAGAGTGAAACATTCCTTCAAAAAGCAATCCAAGAGCAAGGGAAGGGTAGAATTATTGACACCATAAATGAAATTCAAGAAAGGCATGATGCTGTGAAAGAGATTGAGAAGAATCTAAATGAGTTGCATCAAGTGTTCCTTGACATGTCTGTGTTGGTTCAATCACAAGGTGAGCAACTAGATGACATTGAAAGCCATGTTGCAAGAGCTAACTCATTTGTTAAGACCGCAACACAAGAGTTGTATGTTGCAAGAAAGCATCAGAGAAGCACCAGAAAATGGACCTGTTATGCTATTATCCTAATCCTAGTGATAATCTTGTTTGTGGTGTTATTTGTTGTGAAACCATGGGAACATAAGGCCAGTGGTGGTGGTGGTAATAGTAATAATAGTGGTATTCAAGTTTCTCCAGTTCAAACAACACCACCACCACCTCCTCCTCCTCCTCAAGCATAA 990 0.4596 MNDLLSTSFPHGQPSPEHHTIEMNSGGANLDKFFSDVEAIKEELTELESLRQRLKTSNENSKTLHNATAVKNLRSQMDADVGLALKKAKVVKLKLEALDRSNAANRSVLGCGPGSSSDRTRSSVVNGLKKKLKESMDSFNELRQQISSEYRETVQRRYFTVTGDNPDEKTLDLLISSGESETFLQKAIQEQGKGRIIDTINEIQERHDAVKEIEKNLNELHQVFLDMSVLVQSQGEQLDDIESHVARANSFVKTATQELYVARKHQRSTRKWTCYAIILILVIILFVVLFVVKPWEHKASGGGGNSNNSGIQVSPVQTTPPPPPPPPQA* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0348 329 CDD SynN 30 187 IPR006011 GO:0016020
Lan19g0348 329 CDD SNARE_syntaxin1-like 199 259 - -
Lan19g0348 329 Gene3D - 184 293 - -
Lan19g0348 329 SMART tSNARE_6 195 262 IPR000727 -
Lan19g0348 329 Coils Coil 125 149 - -
Lan19g0348 329 Pfam Syntaxin 32 235 IPR006011 GO:0016020
Lan19g0348 329 PANTHER SYNTAXIN 14 300 IPR045242 -
Lan19g0348 329 Pfam SNARE domain 236 288 IPR000727 -
Lan19g0348 329 Coils Coil 200 220 - -
Lan19g0348 329 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 14 300 - -
Lan19g0348 329 Coils Coil 30 67 - -
Lan19g0348 329 SMART SynN_4 25 151 IPR006011 GO:0016020
Lan19g0348 329 MobiDBLite consensus disorder prediction 299 329 - -
Lan19g0348 329 MobiDBLite consensus disorder prediction 301 315 - -
Lan19g0348 329 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 200 262 IPR000727 -
Lan19g0348 329 ProSitePatterns Syntaxin / epimorphin family signature. 206 245 IPR006012 GO:0005484|GO:0006886|GO:0016020
Lan19g0348 329 SUPERFAMILY t-snare proteins 28 255 IPR010989 GO:0016020|GO:0016192
Lan19g0348 329 Gene3D - 27 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0348 Lan-Chr19 4232044 4234400 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0348 24 329 SNARE and Associated Proteins AT3G11820 68.954 1.42e-142 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0348 K08486 - gmx:100809258 434.106