Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0347 ATGAAGAATTTGCTCTCTGGTTCCTTCTCTGGCTTCCAATCCTCTCAAGACAACAACAACAGCCATGTCATCCAGATGTCTGAAACGATGTCGTCACAAGTCCCCAACCTAGAAAAGTTCTTCTCTGAAGTAGAAATGGTGAAGCAAGAACTCAAACAACTTGAACATCTCTACAATAAACTCGAAAGCTCCAACGAACAAAGCAAGACCCTTCACAGCCTCAAAGCTGTGAAGGATCTTCACTCTCGTATGGATGCTGATGTGGCACTTACACTAAAAAAAGCAAAGATCATTAAGTCTATGTTGCAAGCCCTAGACCGGTCTAATGAGGTGAGTCGGTCCTTGCCAGGTTTGGGGACCGGTTCATCGTCAGACCGGACCAGGACCTCGGTTGTGAGCGGTTTAAGGAAGAATATGAAGGACTCAATGGAGAGTTTCAATAGCTTGAGGGAGCAGATATCTTCGGAGTATAGAGACACCGTGCAACGTAGATACTACACTGTTACCGGTGATAAGCCTGATGATAAAACCATTGACCTTCTCATCTCTACTGGTGAGAGTGAAACTTTATTACAGAAAGCAATCCAACAACAAGGGAGAGGAACCATAATGGACACGATCCAAGAAATTAAGGAGAGGCATGGAACAGTGAAAGAAATAGAGAGGAATTTAAAGGAGTTACACCAAGTGTTCTTGGACATGTCAGTGTTGGTCCAAACACAGGGTGAACATTTGGATGACATAGAAAGCCACATGGCACGTGCTGATTCGGATGTTAGGGGTGGGGTCCAGCAATTGCAGGTTGCTAGGAAGCACCAGAAGAATACTCGTAAATGGACTTGTATTGCAATTATAATTCTTCTCATTATCATATTGGTCATAGTTCTTTCTATTGTTTTAAAAAAGTGA 909 0.4301 MKNLLSGSFSGFQSSQDNNNSHVIQMSETMSSQVPNLEKFFSEVEMVKQELKQLEHLYNKLESSNEQSKTLHSLKAVKDLHSRMDADVALTLKKAKIIKSMLQALDRSNEVSRSLPGLGTGSSSDRTRTSVVSGLRKNMKDSMESFNSLREQISSEYRDTVQRRYYTVTGDKPDDKTIDLLISTGESETLLQKAIQQQGRGTIMDTIQEIKERHGTVKEIERNLKELHQVFLDMSVLVQTQGEHLDDIESHMARADSDVRGGVQQLQVARKHQKNTRKWTCIAIIILLIIILVIVLSIVLKK* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0347 302 ProSitePatterns Syntaxin / epimorphin family signature. 213 252 IPR006012 GO:0005484|GO:0006886|GO:0016020
Lan19g0347 302 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 207 269 IPR000727 -
Lan19g0347 302 Gene3D - 35 167 - -
Lan19g0347 302 SUPERFAMILY t-snare proteins 36 262 IPR010989 GO:0016020|GO:0016192
Lan19g0347 302 SMART tSNARE_6 202 269 IPR000727 -
Lan19g0347 302 CDD SynN 37 194 IPR006011 GO:0016020
Lan19g0347 302 Gene3D - 201 301 - -
Lan19g0347 302 SMART SynN_4 32 158 IPR006011 GO:0016020
Lan19g0347 302 Coils Coil 37 71 - -
Lan19g0347 302 CDD SNARE_syntaxin1-like 206 267 - -
Lan19g0347 302 Pfam SNARE domain 245 295 IPR000727 -
Lan19g0347 302 PANTHER SYNTAXIN 15 297 IPR045242 -
Lan19g0347 302 PANTHER SYNTAXIN-121 15 297 - -
Lan19g0347 302 Pfam Syntaxin 39 242 IPR006011 GO:0016020
Lan19g0347 302 MobiDBLite consensus disorder prediction 109 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0347 Lan-Chr19 4220871 4222714 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0347 36 281 SNARE and Associated Proteins AT3G11820 69.106 1.82e-124 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0347 K08486 - gmx:100793347 384.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g1070 5 23997502 23999582 Lan19g0347 19 4220871 4222714 LSH