Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0345 ATGAACAACACAACCAATTCCTCTTCACTTCATAGCTCCATTACCCTCAGCAACTATGGCTATGGCATAGCAATTTCCATTGGAATAATTCTCCTTATTCTAACCATAAGCCTCACCTTATATTTCTGCACTCGATCACAAATGCTATCTTTACCACCAACTACTCTAATTACAAGAAGATTCTATACCCCTAATATAGCTAATTTCTTTGAACCACAACACTCAAGAGTTGATGTGGGTCTAGATGAAGAAACTATTTTGAGTTATCCAAAGTTTTTGTATTCTGAAGCTAAGCTCAAGAATTTGTCTGATTCAACTGCAACATGTTGTATCATATGTTTGGGTGATTATAAGGGAAGTGATATGATTAGGGTTTTACCAGATTGTGGTCATCAATTTCACCTAAATTGTATAGATCCATGGTTGAGATTGCATCCTACTTGTCCAGTTTGTAGAACTTCTCCGATGCCAACACCAATCTAG 483 0.3665 MNNTTNSSSLHSSITLSNYGYGIAISIGIILLILTISLTLYFCTRSQMLSLPPTTLITRRFYTPNIANFFEPQHSRVDVGLDEETILSYPKFLYSEAKLKNLSDSTATCCIICLGDYKGSDMIRVLPDCGHQFHLNCIDPWLRLHPTCPVCRTSPMPTPI* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0345 160 Pfam Ring finger domain 110 152 IPR001841 -
Lan19g0345 160 ProSiteProfiles Zinc finger RING-type profile. 110 152 IPR001841 -
Lan19g0345 160 SUPERFAMILY RING/U-box 109 155 - -
Lan19g0345 160 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 157 IPR013083 -
Lan19g0345 160 SMART ring_2 110 151 IPR001841 -
Lan19g0345 160 CDD RING-H2_PA-TM-RING 109 152 - -
Lan19g0345 160 PANTHER RING-H2 FINGER PROTEIN ATL71-RELATED 1 159 - -
Lan19g0345 160 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 159 IPR045899 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0345 Lan-Chr19 4194559 4195305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0345 16 159 C3H Transcription Factor Family AT5G06490 49.375 1.84e-44 143
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g1067 5 23974451 23975219 Lan19g0345 19 4194559 4195305 LSH