Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0340 ATGGGAAACAATTGTGTTGGATCAAGAAGCTCCAAAGATGGACTATTTCCTTATATTCTTCCAAGGTCATTCTGGTTGTCACAAAGTACCAACTCAATTTCCAATGTAATCTCACCTATGACTAAAATTCCAAATCAAAATGCTCTAAACATTGTTCAACAAAAACCTCCAGAGATAATGAAAATTCATAACAAGGATATGAAGCATGAAGAGGACAAAGATTCTAAGTCTAGTTCAGAAGATCAAGTAAATCACATAAGGGAAGTAGTTAAAAAAGAGGAGCTTTCCAAACCAAAACCAAAGATGCTCCAAACTGTTAAGAGGGTAAAAACTTCAGGGCTTGAAGAAGATTCAGTCTTGTTGACAAAAAGTGGAAATCTGAAAGAGTACTATAATTTGGGAATCGAACTTGGAAAAGGACAATACGGAATTACTTCCCTTTGCATTGAGAAAGCTACAAGGAAAAAATATGCATGCAAGTCCATTGCAAAAGAAAAGTTGCTGGTAGATGATGATGTGGAGGATGTGAGGAGGGAAATTCAGATAATGCACCACTTGATAGGAAGTCCTAATGTGATCTCGATCGAAGGCGCTTATGAGGACTCGGCTGCAGTTCATGTTGTGATGGAATTATGTGCAGGAGGTGAGTTGTTTGATAGGATTGTGGAAAAGGGGCATTACACAGAAAGAAAAGCAGCTAAGCTTGCAAGGACTATTGTTAGTGTTGTAGAGGCTTGCCATTCCCTTGGAGTAATGCATCGCGATCTTAAGCCGGAGAATTTTCTTTTTGTTGATGAGAAGGAAGACTCTACCCTTAAGGCAATAGATTTTGGAATGTCTGTTTTCTTCAAACCAGGAGATGTTTTCACTGACATGGTAGGAAGTCCTTATTATATTGCACCCGAAGTTCTACGCAAAAAATATGGACCTGAAGCAGATGTATGGAGTGCTGGAGTGATCATATACATTCTCTTATGTGGAACCCCTCCATTTTGGGGTGAATCCGAGCAAGAGATATTCAAGGAGGTTTTGGATGGTGATCTTGATTTCTCTTTAGATCCTTGGCCAACTATCTCTGAAAGTGCAAAAGACTTGATCAGGAAGATGCTTGTTAGAGATCCTAGAAATCGAATAACAGCACATGAAGTTCTTTGTCACCCTTGGATTCAGGTTGATGGAGTTGCTCCAGACAAGCCTCTTGACTCGGCAGTTTTGAGTCGCCTGAAACAGTTTTCTGCTATGAACAAGCTCAAGAAAATGGCGCTTAGAATTATTGCAGAGAATCTCTCTGAAGAAGAAATTTCCGGATTGAAAGAAATGTTTAAGATGATAGACACAGATAACAGTGGCCAAATCACTTTTGAAAAACTCAAGATTGGACTGAAAACATTTGGTGCCAATCTCACTGAACCTGAAATATATGATCTAATGCAAGCTGCAGATGTTGATAACAGTGGCACAATTGACTATGGAGAATTCTTAGCTGCAACATTGCATTTAAACAAAGTTGATAGAGAAGATCATTTAGTTGCTGCTTTCTCATATTTTGATAAAGATGCAAGTGGCTACATTACTCAAGATGAACTTCAACAAGCTTGTGAAGAATTTGGCATGGAGAATATCCACTTAGAGGAAATGATCCAAGAAGCTGATCAGAATAATGATGGCAGAGTAGACTACAATGAATTTGTAGCTATGATGCAGAGAGGGGATGTAGATTTAAGTAAGAGTGTTCAAAAGAGTACTACTAATTTTGGCATTGGATTTATGGAGGCACTATCAGTGTGTTAA 1791 0.3853 MGNNCVGSRSSKDGLFPYILPRSFWLSQSTNSISNVISPMTKIPNQNALNIVQQKPPEIMKIHNKDMKHEEDKDSKSSSEDQVNHIREVVKKEELSKPKPKMLQTVKRVKTSGLEEDSVLLTKSGNLKEYYNLGIELGKGQYGITSLCIEKATRKKYACKSIAKEKLLVDDDVEDVRREIQIMHHLIGSPNVISIEGAYEDSAAVHVVMELCAGGELFDRIVEKGHYTERKAAKLARTIVSVVEACHSLGVMHRDLKPENFLFVDEKEDSTLKAIDFGMSVFFKPGDVFTDMVGSPYYIAPEVLRKKYGPEADVWSAGVIIYILLCGTPPFWGESEQEIFKEVLDGDLDFSLDPWPTISESAKDLIRKMLVRDPRNRITAHEVLCHPWIQVDGVAPDKPLDSAVLSRLKQFSAMNKLKKMALRIIAENLSEEEISGLKEMFKMIDTDNSGQITFEKLKIGLKTFGANLTEPEIYDLMQAADVDNSGTIDYGEFLAATLHLNKVDREDHLVAAFSYFDKDASGYITQDELQQACEEFGMENIHLEEMIQEADQNNDGRVDYNEFVAMMQRGDVDLSKSVQKSTTNFGIGFMEALSVC* 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0340 596 ProSitePatterns EF-hand calcium-binding domain. 481 493 IPR018247 -
Lan19g0340 596 Gene3D Transferase(Phosphotransferase) domain 1 217 394 - -
Lan19g0340 596 ProSiteProfiles EF-hand calcium-binding domain profile. 432 467 IPR002048 GO:0005509
Lan19g0340 596 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 2 82 578 - -
Lan19g0340 596 CDD EFh 437 496 IPR002048 GO:0005509
Lan19g0340 596 ProSitePatterns Protein kinases ATP-binding region signature. 137 164 IPR017441 GO:0005524
Lan19g0340 596 Gene3D Phosphorylase Kinase; domain 1 134 216 - -
Lan19g0340 596 Pfam Protein kinase domain 134 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan19g0340 596 SMART efh_1 472 500 IPR002048 GO:0005509
Lan19g0340 596 SMART efh_1 542 570 IPR002048 GO:0005509
Lan19g0340 596 SMART efh_1 436 464 IPR002048 GO:0005509
Lan19g0340 596 SMART efh_1 508 536 IPR002048 GO:0005509
Lan19g0340 596 ProSiteProfiles EF-hand calcium-binding domain profile. 468 503 IPR002048 GO:0005509
Lan19g0340 596 PANTHER SERINE/THREONINE-PROTEIN KINASE 82 578 - -
Lan19g0340 596 ProSiteProfiles Protein kinase domain profile. 131 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan19g0340 596 SUPERFAMILY Protein kinase-like (PK-like) 130 390 IPR011009 -
Lan19g0340 596 SMART serkin_6 131 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan19g0340 596 ProSitePatterns EF-hand calcium-binding domain. 517 529 IPR018247 -
Lan19g0340 596 ProSiteProfiles EF-hand calcium-binding domain profile. 504 539 IPR002048 GO:0005509
Lan19g0340 596 ProSiteProfiles EF-hand calcium-binding domain profile. 542 573 IPR002048 GO:0005509
Lan19g0340 596 Pfam EF-hand domain pair 508 568 IPR002048 GO:0005509
Lan19g0340 596 Pfam EF-hand domain pair 437 497 IPR002048 GO:0005509
Lan19g0340 596 Gene3D - 396 571 - -
Lan19g0340 596 CDD STKc_CAMK 131 388 - -
Lan19g0340 596 ProSitePatterns Serine/Threonine protein kinases active-site signature. 251 263 IPR008271 GO:0004672|GO:0006468
Lan19g0340 596 CDD EFh 508 568 IPR002048 GO:0005509
Lan19g0340 596 ProSitePatterns EF-hand calcium-binding domain. 551 563 IPR018247 -
Lan19g0340 596 SUPERFAMILY EF-hand 428 569 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0340 Lan-Chr19 4145857 4150471 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0340 1 572 EF-hand Containing Proteins AT5G04870 65.714 0.0 795
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lan19g0340 Pkinase 3.7e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0340 K13412 - gmx:100814475 867.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan19g0340 19 4145857 4150471 Lan11g1493 11 26284133 26290821 PCT