Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0325 ATGGCTTCAAGATTCTGGACACAGGGTGCTAGTGATTCTGAGGAAGAGGAGGGAAGTGATTATAATAACGAGGAGATTGAAAATGAAGCAACAGGTGAACCTTCTAATCTAGCTGACAAGTACATCCGGGGTAATGCAAGTGACAGTGATGACTCCGATGGCGAAAAACGTGTCGTCAAATCTGCAAAAGATAAGCGTTTTGAGGAGATGAATCTTACCGTTGATCAAATGAAGAATGCCACGAAGATTAATGACTGGGTCAGTTTACAAGAGAGCTTTGACAAGATCAACAAACAGCTTGAGAAAGTTATGCGTGTTACCGAGTCTGATAAGGTCCCTAATCTTTATATTAAGGCCCTTGTGATGTTGGAAGATTTCTTGGCTCAGGCTTTGGCAAATAAGGAAGCCAAAAAGAAGATGAGTAGTAGCAATGCCAAGGCCTTGAACTCTATGAAGCAAAAATTGAAGAAAAACAATAAGCAATATGAGGACTTGATTAATAAGTGCCGGGAGGGTCCTGAGAGTGAGGACGAAAAGGCTGAAGATGAGGAATCAGAGGAAGAATATGAGAGTGATGATGAGATCATTGAGCCGAATCAACTTAGCAAGAATGTTACGAAATCGGATTCCGAAGCTGATGGATATGATGATGTTAAGGCAGATACCGGCGATGGACCATGGGACCAAAAGCTTAGCAAGAAAGATAGGCTTTTGGATAGGCAATTTATGAAAGACCCTAGTGAGATTACTTGGGACACAGTTAACAAGAAATTCAAAGAGGTTGTGGCAGCTAGGGGCAAGAAGGGAACCGGAAGGTTTGAACAGGTTGAGCAGCTTACATTCTTAACGAAAGTTGCTAAAACACCTGCACAGAAGCTGGAAATTCTTTTCAGTGTCGTTTCTGCGCAGTTTGATGTTAATCCCGGCCTTAGTGGGCATATGCCCATAACTGTGTGGAAAAAATGTGTGCAGAACATGCTGCTCATTCTTGATATCCTAGTGCAGTACCCAAACATAGTGGTTGATGATTCAGTGGAGGCAGATGAGAATGAAACTCAGAAAGGGGCTGACTATAATGGACCAATTCGTGTTTGGGGTAACTTAGTTGCTTTTTTGGAAAAAATGGATGCTGAGTTTTTCAAGAGCCTACAGTGCATAGATCCTCATACCCGTGAGTATGTTGAGAGACTTAGGGATGAGCCTGTGTTTCAGGTTCTTGCTCAGAATGTTCAGGAATATCTTGAAAGGAGTGGAGATTTCAAAGCTGCTTCTAAGGTAGCTTTGAGGAGGGTTGAACTTATTTACTATAAGCCACAAGAGGTTTATGATGCCATGAGAAAACTTGCCGAGCTGACAGAAGATGGAGATAACGAAGGGGAGGAGTCCAAAGGGATTGAAGCAACAAGAATTCCTACTGCCTTTGTTGTTACCCCAGAGCTTGTGCCCCGGAAACCCACCTTTCCTGAGAATAGCAGGACCCATATGGATGTATTGGTGTCTTTGATATACAAATATGGTGATGAGCGCACTAAAGCGCGAGCAATGCTTTGTGATATATATCATCATGCTCTTCATGATGAGTTCTCAATAGCCCGTGATCTGCTACTGATGAGCCATTTGCAGGATAGTGTTCAGCATATGGATGTCTCAGCACAGATACTTTTTAACAGGGCCATATCACAATTGGGTCTATGTGCTTTTCGAGTTGGACTGATTTCTGAAGCACATAGCTGTCTGTCTGAACTCTATTCTGGTGGTAGGGTGAAAGAGTTGCTTGCACAAGGTGTGTCACAAAGTCGTTATCATGAGAAGACTCCAGAACAGGAAAGGTTGGAAAGAAGGCGTCAAATGCCATATCATATGCACATAAATCTTGAGCTCCTGGAGTCGGTGCATCTTATATCTGCTATGCTGCTCGAAGTTCCCAATATGGCTGCCAATGTCCACGACTCAAAGCGAAAGATCATTAGTAAGAACTTTCGTCGCATGCTTGAGGTCAGTGACAGACAATCATTCACTGGGCCACCCGAAAATGTCAGAGATCATGTTATGGCTGCCACAAGGGCTCTTACAAAGGGAGACTTCCAGAAGGCATTTGATGTTATTGTGTCTCTCAATGTATGGAAATTTGTGAGAAATCAAGATGCTGTGCTTGAAATGCTGAAGGACAAAATCAAGGAGGAAGCATTGAGGACATACCTCCTTACCTTTTCTTCATCATATGATTCCTTGAGCCTAAATCAGCTCACAAAAATCTTTGACCTCTCAGTTCCTCACACTCACAGCATTGTTAGTAAGATGATTATCAATGAGGAGCTTCATGCAAGCTGGGACCAGCCAACTGGGTGCATTGTGTTCCAAGATGTTGAACACAGTCGGTTGCAGGCATTGGCATTCCAGTTGACCGAGAAATTAACTATCCTTGCAGAGAGTAACGAAAGAGCAACAGAGGCTAGAATAGGCGGTGGTGGATTGGATCTGCCTCTGAGGCGGAGAGACGGTCAGGACTATGCTACTGCCGCTGCTGCTGGTGGAGCTGCCTCTTTAGGTGGTGGTAGGTGGCAAGATTTCAACCTTTCTCAGCCAAGGCAAGGCAGCGGTCGTGCAGGAGGATATGGTGGTGGCGGTGGAAGAGGATTCAGTCAAGCAGCTGGTGGCTATTCAAGGGACCGAGCTGGACGAGGTTATCAGGGTACACGGTACCAAGATGCCTCATATGGAGGCTCAGGGAGGAGTCAAGGTGGTTCATCATTGAGGGGCCCCCATGGAGATATATCTACTCGTATGGTTAGCCTTAAGGGAGTTCGTGCCTAA 2814 0.446 MASRFWTQGASDSEEEEGSDYNNEEIENEATGEPSNLADKYIRGNASDSDDSDGEKRVVKSAKDKRFEEMNLTVDQMKNATKINDWVSLQESFDKINKQLEKVMRVTESDKVPNLYIKALVMLEDFLAQALANKEAKKKMSSSNAKALNSMKQKLKKNNKQYEDLINKCREGPESEDEKAEDEESEEEYESDDEIIEPNQLSKNVTKSDSEADGYDDVKADTGDGPWDQKLSKKDRLLDRQFMKDPSEITWDTVNKKFKEVVAARGKKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVVSAQFDVNPGLSGHMPITVWKKCVQNMLLILDILVQYPNIVVDDSVEADENETQKGADYNGPIRVWGNLVAFLEKMDAEFFKSLQCIDPHTREYVERLRDEPVFQVLAQNVQEYLERSGDFKAASKVALRRVELIYYKPQEVYDAMRKLAELTEDGDNEGEESKGIEATRIPTAFVVTPELVPRKPTFPENSRTHMDVLVSLIYKYGDERTKARAMLCDIYHHALHDEFSIARDLLLMSHLQDSVQHMDVSAQILFNRAISQLGLCAFRVGLISEAHSCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLESVHLISAMLLEVPNMAANVHDSKRKIISKNFRRMLEVSDRQSFTGPPENVRDHVMAATRALTKGDFQKAFDVIVSLNVWKFVRNQDAVLEMLKDKIKEEALRTYLLTFSSSYDSLSLNQLTKIFDLSVPHTHSIVSKMIINEELHASWDQPTGCIVFQDVEHSRLQALAFQLTEKLTILAESNERATEARIGGGGLDLPLRRRDGQDYATAAAAGGAASLGGGRWQDFNLSQPRQGSGRAGGYGGGGGRGFSQAAGGYSRDRAGRGYQGTRYQDASYGGSGRSQGGSSLRGPHGDISTRMVSLKGVRA* 938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0325 937 Coils Coil 145 172 - -
Lan19g0325 937 MobiDBLite consensus disorder prediction 1 62 - -
Lan19g0325 937 MobiDBLite consensus disorder prediction 13 27 - -
Lan19g0325 937 MobiDBLite consensus disorder prediction 209 227 - -
Lan19g0325 937 MobiDBLite consensus disorder prediction 176 195 - -
Lan19g0325 937 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 932 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Lan19g0325 937 SUPERFAMILY "Winged helix" DNA-binding domain 715 790 IPR036390 -
Lan19g0325 937 MobiDBLite consensus disorder prediction 902 920 - -
Lan19g0325 937 SMART PINT_4 720 808 IPR000717 -
Lan19g0325 937 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT C 1 932 - -
Lan19g0325 937 MobiDBLite consensus disorder prediction 853 937 - -
Lan19g0325 937 MobiDBLite consensus disorder prediction 168 227 - -
Lan19g0325 937 Gene3D - 725 795 IPR036388 -
Lan19g0325 937 Pfam PCI domain 659 787 IPR000717 -
Lan19g0325 937 ProSiteProfiles PCI domain profile. 619 791 IPR000717 -
Lan19g0325 937 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 47 650 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Lan19g0325 937 MobiDBLite consensus disorder prediction 44 62 - -
Lan19g0325 937 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 2 879 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Lan19g0325 937 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 720 808 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0325 Lan-Chr19 3931532 3935483 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0325 1 937 Eukaryotic Initiation Factors Gene Family AT3G56150 67.838 0.0 1190
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g1043 5 23704780 23709446 Lan19g0325 19 3931532 3935483 LSH