Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0319 ATGGCGAAACGGAGGAGGGCAGCGTTAGAGGCGGAGGATGCGGATTTCGAGACGACGGAAGGAGTAAAAGCGATAGGGAGCTTTGAAGAGATGGGAATAAAAGATGATCTTCTTCGAGGGATTTACCAATACGGTTTTGAGAAACCTTCTGCTATTCAGCAACGGGCCGTGACGCCAATCATACAGGGCCGTGACGTCATCGCTCAGGCCCAGTCCGGTACCGGAAAAAGTTCCATGATTGCTCTCACTGTTTGTCAGATCGTTGATACCTCCGTTCGAGAGGTGCAAGCCTTAATAGTGTCTCCTACAAGGGAACTGGCTTCACAGACTGAAAAGGTTATATTAGCAATTGGGGACTTCATTAATATACAAGCACATGCATGCATTGGTGGTAAAAGTGAGGGAGAAGATATGAGCAAGCTGGAGTATGGAGTTCACGTGGTATCTGGAACTCCAGGACGGGTTTGTGACATGATCAAAAGGAGAACATTGCGCACAAGAGCTATCAAGTTACTAGTTCTGGATGAATCTGATGAAATGTTGAGCAGAGGGTTTAAAGATCAAATTTATGATGTGTACAGATATCTCCCACCAGACCTTCAGGTGGTCTTGATTTCTGCTACCCTTCCTCATGAAATACTGGAGATGACAAATAAGTTCATGACAGATCCAGTAAGGATCCTTGTTAAACGTGATGAATTGACATTGGAGTTGAAGAGAACTCAGTCGGATAGAGAACGAGGGCGCAAACGTGAGAGCGAGAGCGAGAGGAGCCATGGGAGTGGAAGAGGAAGAGGTTCAGATAGAGAAGAGAGGAAAGAGAAGAAGAAGGTGGAAAACAATGAGTTTGATGATGATGATGATAATGGGAGAAGGAACAATAGGTCGCTTAAGTCTCGGCATGAAAGGTCGCCGGAGCACCATCGGAATGGGAAGAGAAGCCATAGGTCTCACTCTCCACCGCAACCTCATGCCTCCACTGCTGCAAATGGAAAACCTCTCGATGAGGTAACAAACTCCAGAGGAGCTGAACAAATGAATGATGAGGACGACTCTGTTGCGAAGATGAAGGCTGCTGAGGAAGCTTTAGAAGAGAAACAAAAGCAAAAACCTTCATTTGAACTATCTGGAAAGCTTGCAGCTGAAACAAATCGATTCAGAGGTGTTACTTTGTTGTTCAATGAGCCTCCAGAAGCTCGAAAACCTGATATTAAATGGAGACTTTATGTTTTCAAGGCTGGTGAAGTGCTAAACGAGCCCCTATATATACATCGACAAAGCTGTTATCTTTTTGGAAGGGAAAGAAGGGTTGCTGATATCCCAACAGACCATCCATCTTGCAGCAAGCAACATGCTGTTATTCAATTCCGGCAAGTTGAAAATGAGGAACCTGATGGTACAGTATCAAAGCAAATAAGGCCTTACATAATGGATCTCGGAAGCACAAACAAAACTTTTGTTAATGAGAGTCCCATCGAACCTCAACGATACTACGAGCTTAGGGAAAGGGACACCATTAAATTTGGTAATAGTAGCCGAGAATATGTATTACTACATGAGAACTCAATCGGGTAA 1575 0.4444 MAKRRRAALEAEDADFETTEGVKAIGSFEEMGIKDDLLRGIYQYGFEKPSAIQQRAVTPIIQGRDVIAQAQSGTGKSSMIALTVCQIVDTSVREVQALIVSPTRELASQTEKVILAIGDFINIQAHACIGGKSEGEDMSKLEYGVHVVSGTPGRVCDMIKRRTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTNKFMTDPVRILVKRDELTLELKRTQSDRERGRKRESESERSHGSGRGRGSDREERKEKKKVENNEFDDDDDNGRRNNRSLKSRHERSPEHHRNGKRSHRSHSPPQPHASTAANGKPLDEVTNSRGAEQMNDEDDSVAKMKAAEEALEEKQKQKPSFELSGKLAAETNRFRGVTLLFNEPPEARKPDIKWRLYVFKAGEVLNEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVENEEPDGTVSKQIRPYIMDLGSTNKTFVNESPIEPQRYYELRERDTIKFGNSSREYVLLHENSIG* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0319 524 Pfam DEAD/DEAH box helicase 51 213 IPR011545 GO:0003676|GO:0005524
Lan19g0319 524 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 26 54 IPR014014 GO:0003724
Lan19g0319 524 PANTHER BNAC03G41130D PROTEIN 11 237 - -
Lan19g0319 524 SMART ultradead3 45 243 IPR014001 -
Lan19g0319 524 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 57 227 IPR014001 -
Lan19g0319 524 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 11 237 - -
Lan19g0319 524 Coils Coil 231 251 - -
Lan19g0319 524 SMART FHA_2 428 492 IPR000253 GO:0005515
Lan19g0319 524 Coils Coil 346 376 - -
Lan19g0319 524 Pfam FHA domain 429 509 IPR000253 GO:0005515
Lan19g0319 524 MobiDBLite consensus disorder prediction 342 372 - -
Lan19g0319 524 MobiDBLite consensus disorder prediction 239 304 - -
Lan19g0319 524 CDD FHA 405 512 IPR000253 GO:0005515
Lan19g0319 524 CDD DEADc_EIF4AIII_DDX48 28 228 - -
Lan19g0319 524 Gene3D - 11 230 IPR027417 -
Lan19g0319 524 MobiDBLite consensus disorder prediction 305 319 - -
Lan19g0319 524 ProSiteProfiles Forkhead-associated (FHA) domain profile. 429 492 IPR000253 GO:0005515
Lan19g0319 524 MobiDBLite consensus disorder prediction 239 375 - -
Lan19g0319 524 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 21 230 IPR027417 -
Lan19g0319 524 SUPERFAMILY SMAD/FHA domain 395 520 IPR008984 GO:0005515
Lan19g0319 524 Gene3D - 390 523 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0319 Lan-Chr19 3829937 3843385 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0319 8 237 Eukaryotic Initiation Factors Gene Family AT3G19760 81.304 5.54e-134 393
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0319 K13025 - gmx:100800020 425.631