Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0313 ATGGTCTATGATAGGACCCTACAGATTCTGATGTACAAGAGTAGTGGTGGGTGCAAAGTTGTTAGTCCAGGATGCGGCGTTGAATGGTTAATAATTAGCGGGCCGAGCATTGCGAGGAAAAGGAGGGAGAAGCTTGATTCTGTTTTTTTCTGGATTTCACTGTATACAACAAAAGTTTCACCCAGTATGGAAGCCGAAAAATCTAATGATTCAAAGGCTGAAGAACTAAAGCTCCTAGCCAATGAAGCATTTAGTGCCCGGAAATATTCTCAAGCTATTGATTTATATACACAAGCAATTGAGCTCAAAAGTGAAAGTGCAGTTTACTGGGCTAACCGTGCATTTGCCCATATTCGGCTAGAAGAATATGGTAGTGCAATAGAAGATGCTACAAAGGCTATTGAAGTTGATCCTAAATATTCAAAGGGTTATTACAGGCGAGGTGCTGCGCATCTAGGGCTGGGAAAATTCAAGGAAGCACTGAAAGATTTTCAGCAGGTTAAGAAAATGTGTCCAAACGATCCTGATGCAACAAAGAAATTGAAGGAATGTGAAAAAGCAGTTACGAAACTTAAGTTTGAAGAAGCAATTGCTGCTCCGGAGGCTGAAAGGCATTCAATAGCTGAATCCATAGATTACAAGTCTATAGGAAAGGGTCGCAATTCTTCGGTGCCCACCAAAATGGCCATAGCGGCAGTGACAGTAGCAGTTATGGCAGTGGTGGTGATGTTGTTCAGGTCATCAATGACCATAATTGTTGCTGCAATTGTGGTTGGTTTGCTGTTGCTCCTTGGGGCATTTGGGTGGAGTGGCCGCAATACTGATGTTGAGCCACAATACTCAGGAGCAAGAATAGAGGGGGATATTATTACTTTAGATTTTGTGAAGAAAATGATGGACGATTTCAAAAATCAGAAGTCCTTACATAAACGGTATGCATACCAGATTGTGTTGCAAACTAGAGAGAGATTGCAAGCTCTGCCTTCTCTTGTTGATATAAATGTTCCTGATGGCAAACATTTTACCGTTTGTGGCGATGTGCACGGTCAGTTCTATGATCTTTTGAATATTTTTGAGCTTAATGGGCTTCCTTCAGAAGAGAATCCATATCTATTTAATGGTGACTTTGTGGATAGGGGATCTTTTTCTTTGGAAGTCATCCTGACTTTGTTTGCATTTAAGTGCATGTCTCCATCAGCTATATATCTAGCTAGAGGTAATCATGAGAGCAAGAGCATGAACAAGATATATGGTTTTGAGGGCGAGGTGCGCTCGAAGTTGAGTGACTCATTTGTGGAACTATTTGCGGAAGTATTCTGCTCTTTACCTTTGGCTCATGTGATAAATCAGAAAGTTTTTGTAGTTCATGGAGGCCTTTTTAGTGTTGATGGGGTCAAACTCTCTGATATCCGTGCAATTAATCGGTTTTGTGAGCCTCCAGAAGAAGGGTTGATGTGTGAATTGCTATGGAGTGATCCACAACCTCTCCCAGGAAGAGGCCCAAGCAAGCGCGGCGTAGGTCTTTCTTTTGGCGCAGATGTAACGAAAAGGTTTTTACAGGAAAATAATTTAGATTTAGTTGTGCGATCTCACGAAGTAAAGGATGAGGGTTACGAGGTTGATCATGATGGTAAACTCATAACTGTTTTTTCTGCTCCAAATTACTGTGATCAGATGGGTAACAAAGGTGCCTTTATTCGATTTGAAGCACCCGATTTGAAGCCTAACATTGTAACATTCTCTGCAGTGCCACACCCTGATGTCAAACCAATGGCTTATGCAAACAACTTCCTTCGGATGTTTTCATAG 1809 0.4151 MVYDRTLQILMYKSSGGCKVVSPGCGVEWLIISGPSIARKRREKLDSVFFWISLYTTKVSPSMEAEKSNDSKAEELKLLANEAFSARKYSQAIDLYTQAIELKSESAVYWANRAFAHIRLEEYGSAIEDATKAIEVDPKYSKGYYRRGAAHLGLGKFKEALKDFQQVKKMCPNDPDATKKLKECEKAVTKLKFEEAIAAPEAERHSIAESIDYKSIGKGRNSSVPTKMAIAAVTVAVMAVVVMLFRSSMTIIVAAIVVGLLLLLGAFGWSGRNTDVEPQYSGARIEGDIITLDFVKKMMDDFKNQKSLHKRYAYQIVLQTRERLQALPSLVDINVPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSLEVILTLFAFKCMSPSAIYLARGNHESKSMNKIYGFEGEVRSKLSDSFVELFAEVFCSLPLAHVINQKVFVVHGGLFSVDGVKLSDIRAINRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQENNLDLVVRSHEVKDEGYEVDHDGKLITVFSAPNYCDQMGNKGAFIRFEAPDLKPNIVTFSAVPHPDVKPMAYANNFLRMFS* 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0313 602 Gene3D - 269 601 IPR029052 -
Lan19g0313 602 Gene3D Tetratricopeptide repeat domain 63 222 IPR011990 GO:0005515
Lan19g0313 602 PANTHER BNAC09G39960D PROTEIN 73 246 - -
Lan19g0313 602 PANTHER BNAC09G39960D PROTEIN 275 601 - -
Lan19g0313 602 Pfam PPP5 TPR repeat region 273 332 IPR013235 -
Lan19g0313 602 ProSiteProfiles TPR repeat profile. 73 106 IPR019734 GO:0005515
Lan19g0313 602 SMART pp2a_7 308 584 IPR006186 GO:0016787
Lan19g0313 602 SUPERFAMILY TPR-like 65 198 IPR011990 GO:0005515
Lan19g0313 602 Pfam Tetratricopeptide repeat 79 140 - -
Lan19g0313 602 Pfam Tetratricopeptide repeat 142 174 IPR001440 GO:0005515
Lan19g0313 602 PIRSF PPPtase_5 60 602 - -
Lan19g0313 602 SUPERFAMILY Metallo-dependent phosphatases 288 596 IPR029052 -
Lan19g0313 602 ProSiteProfiles TPR repeat profile. 107 140 IPR019734 GO:0005515
Lan19g0313 602 PRINTS Serine/threonine phosphatase family signature 340 367 IPR006186 GO:0016787
Lan19g0313 602 PRINTS Serine/threonine phosphatase family signature 370 397 IPR006186 GO:0016787
Lan19g0313 602 PRINTS Serine/threonine phosphatase family signature 403 427 IPR006186 GO:0016787
Lan19g0313 602 PRINTS Serine/threonine phosphatase family signature 437 463 IPR006186 GO:0016787
Lan19g0313 602 PRINTS Serine/threonine phosphatase family signature 467 494 IPR006186 GO:0016787
Lan19g0313 602 PRINTS Serine/threonine phosphatase family signature 523 543 IPR006186 GO:0016787
Lan19g0313 602 PRINTS Serine/threonine phosphatase family signature 545 561 IPR006186 GO:0016787
Lan19g0313 602 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED 275 601 - -
Lan19g0313 602 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED 73 246 - -
Lan19g0313 602 SMART tpr_5 107 140 IPR019734 GO:0005515
Lan19g0313 602 SMART tpr_5 141 174 IPR019734 GO:0005515
Lan19g0313 602 SMART tpr_5 73 106 IPR019734 GO:0005515
Lan19g0313 602 CDD MPP_PP5_C 280 595 IPR041753 -
Lan19g0313 602 Pfam Calcineurin-like phosphoesterase 340 534 IPR004843 GO:0016787
Lan19g0313 602 ProSiteProfiles TPR repeat profile. 141 174 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0313 Lan-Chr19 3580196 3592460 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0313 343 524 Calmodulin-binding Proteins AT5G63870 37.037 1.56e-37 139