Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0303 ATGCTTCACTTTCATCACTTTCACACTTCTCAAATGGAACAAGCCAATGAAATTTTACGTGGATCCACTCAAAACGACGACGTCGTTGCGCTTGACTCAATTCAGTTCAACGAAGAAATTCAGGGAATCATGGCGCCGGTACCGGCGCCGGAAAACGCTAGCTCCTTCACCGCGCTGCTTGAGCTTCCTCCGACTCAGGCCGTCGAGCTTCTCCACTCGCCGGATTCATCTGTCGCTGCCGCTGCTCGGAAACCGCCTCTAGTGAACACGAAGGGATATCTGGTCAACGCCTTCAACGGGAATAGTTTGACCTTTCCTTCGAACTCTGTGTTGATCGAACGCGCTGCGAAGTTCTCTGTGTTTGCCGGAGAGAACTCGTCATCGCCGGAGGAGGCGTGTTTGGTTCCGGTTGGTTCCGGCGATATGGTGAAGAACGAGCCGCAAGAGACGGATTCGAACCCGTGCTCTACGCAAGGTTGCGTTTCGGATCCTGCTGTTGAAAACAAGAATCAGAGGAACGTGAAGAGAAAGGAGCGAGAGAAGAAGGTTAAAGCGTCGTCTAAGAAGAGTAAGAGCGTCGCCGATGAGAATTCCGGTGACGGCGAGAAGCTTCCGTACGTTCATGTTCGAGTTCGTCGAGGTCAAGCTACAGATAGCCATAGCTTAGCAGAAAGGGCTAGGAGAGAGAAAATCAATGCTAGGATGAAGCTTTTACAAGAGCTGGTCCCCGGATGCAACAAGATATCAGGAACAACATTGGTTCTGGATGAAATAATCAACCATGTGCAAAATCTACAACGTCAAGTGGAGTTCTTATCAATGAAACTGGCAGCGGTTAACCCGAGAATCGATTTCAGCCTAGACAGCTTATTGGCTACTGATGGAGCATCTCTAGTGGAAAGTAACTTACCTAGCATGGTTACACCTCTAATGTGGCCAGAAATCCCACATAATGGTATCAGACAGCATTATCAACAGCAGTGGCAATATGATGCATTCCACCAACCACTTTGGGGGAGGGAAGAAGAGAACCACAATTTCATGACTCCAGAAAATTCACTTTTGAGTTATGACTCCTCGGCAAATTCAGCATCTCTGCACTCAAATCAATTGAAGATGAAGCTGTGA 1128 0.4832 MLHFHHFHTSQMEQANEILRGSTQNDDVVALDSIQFNEEIQGIMAPVPAPENASSFTALLELPPTQAVELLHSPDSSVAAAARKPPLVNTKGYLVNAFNGNSLTFPSNSVLIERAAKFSVFAGENSSSPEEACLVPVGSGDMVKNEPQETDSNPCSTQGCVSDPAVENKNQRNVKRKEREKKVKASSKKSKSVADENSGDGEKLPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTTLVLDEIINHVQNLQRQVEFLSMKLAAVNPRIDFSLDSLLATDGASLVESNLPSMVTPLMWPEIPHNGIRQHYQQQWQYDAFHQPLWGREEENHNFMTPENSLLSYDSSANSASLHSNQLKMKL* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0303 375 CDD bHLH_AtBPE_like 205 290 - -
Lan19g0303 375 MobiDBLite consensus disorder prediction 185 206 - -
Lan19g0303 375 Pfam Helix-loop-helix DNA-binding domain 219 247 IPR011598 GO:0046983
Lan19g0303 375 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 215 265 IPR011598 GO:0046983
Lan19g0303 375 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 30 375 - -
Lan19g0303 375 SMART finulus 221 271 IPR011598 GO:0046983
Lan19g0303 375 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 213 284 IPR036638 GO:0046983
Lan19g0303 375 MobiDBLite consensus disorder prediction 145 168 - -
Lan19g0303 375 Coils Coil 255 275 - -
Lan19g0303 375 MobiDBLite consensus disorder prediction 128 206 - -
Lan19g0303 375 Gene3D - 212 284 IPR036638 GO:0046983
Lan19g0303 375 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 30 375 IPR024097 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0303 Lan-Chr19 3362756 3368976 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0303 29 375 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 52.533 1.71e-103 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan19g0303 HLH 5.5e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0303 - - lang:109334778 687.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g0338 9 5203530 5209672 Lan19g0303 19 3362756 3368976 LSH
Lan5g1031 5 23577307 23583009 Lan19g0303 19 3362756 3368976 LSH