Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0301 ATGGCTACAACATTCTGTACATACTTTTTCATTCTCTCACTCACCTTCACAATCTTCAATCTCACTTCACAATCTTCAACACCAGAAAAAAGTACCCTTCTAACATTCAAAGCCTCAATCCAAGACTCCAACAATGCCTTATCTACTTGGTCAAACACTTCATCAAATCACTATTGTAACTGGACTGGAATATCATGCTCCAATATAGAACCATTCTCAGTAACTTCTATTAACCTTCAAAGCCTAAACCTTTCTGGTGATATTTCTTCTTCTATATGTGACTTACCAAACCTCTCTTATCTCAACCTTGCTGATAATATATTCAACCAACCTATTCCACTTCACCTTTCACAGTGTAGTTTCTTGGAAAGTTTGAATCTAAGTAGCAATCTTATATGGGGTACTATCCCAGCTCAGATTTCTCAGTTTGGTTCATTGAAAGTACTTGACTTTAGTAGAAACCATATAGAAGGAAATATCCCTGAAAGCTTGGGTTCATTGAAGAATCTTCAAGTACTTAACATGGGAAGTAACTTGGTTTCAGGTAATGTGCCTGCTATTTTTGGAAACTTAACTAAGCTTGAAGTGCTTGATTTATCTCAAAATCCATACTTGGTGAGTGAGATACCTGAGGATATTGGTGAACTTGGAAGTTTAAAGGAACTTTTGCTTCAAAGTTCTTCTTTTCAAGGTGAGATTCCAGGTTCATTGGTGGGTCTTCATAGTTTGACTCATTTGGATCTATCTGAGAATAATCTAACAGGTTTGGTTCCAAAGTCTCTAGCTTCTTTGAAGAATCTAGTTTCCTTTGATGTTTCACAGAACAAGCTTTCAGGGCCATTTCCAAATGGTATTTGTAAAGGCCTTGTTATAAATCTCAGCCTCCACACAAATACCTTCACAGGTTCAATATCAAACAGTTCTATTAGTGAATGTGAGAGTCTTGAGAGATTTCAAGTCCAGAATAATGGTTTCTCTGGAGATTTCCCTATTGAGCTTTTTTCATTACCTAAAATCAAGCTCATTAGAGCTGAAAATAATAGATTCTCTGGTCAAATACCTGAGTCAATTTCAAAAGCTGTTTTTTTGGAGCAAGTTCAGTTTGACAATAACAGCTTTTCTGGTAAAATCCCTCAAGGACTTGGCTTTGTCAAGAGCTTATACAGATTCTCAGCTTCTTCAAATCATTTTTATGGTGAACTTCCTCCAAATTTTTGTGACTCACCAGTTATGAGCATAGTAAACCTCTCCCACAATTCACTTTCTGGTCAAATCCCTCAGCTGAAAAAATGCAGGAAACTTGTGTCATTATCTTTGGCTGATAATCATGTAACTGGAGAAATACCAACTTCACTTTCTGAGTTACCAGTGTTAACTTATCTTGACCTTTCAGATAACAATCTCACTGGTTCAATCCCACAAGGGCTTCAAAACTTGAAACTTGCACTTTTCAATGTTTCCTTCAATCAACTTTCTGGTGAAGTACCATACTCCTTGATTTCAGGTCTACCTGCCTCATTTTTGGAGGGTAACCCTGATCTTTGTGGACCTGGATTACCAAACTCATGTTCTGATGATTATATGCCAAGGCATCATAATAGCGGTCTTACAATCTTAACATGTGCATTGATCTCTTTAGCCTTTGTTGTTGGAAGTGGCATTGTTGTTGGTGGATTTGTATTGTATAGGAGATCTTGTAAGGGGAACGGTAAGGAAGTAGGTGTTTGGCGCTCGGTGTTCTTCTATCCTCTTAGAATCACTGAGAATGATTTACTTATTGGGATGAATGAGAAAAGCTCATTAGGGAAAGCTGGAACTTTTGGTAAAGCTTATGTTGTGAGTTTGCCTAGTGGTGAATTAGTAGCTGTGAAGAAGCTAGTTAACTTCGGAAACCAGTCTTCGAAGAGTTTGAAAGCTGAGGTGAAAACTTTGGCAAGGATTAGGCATAAAAGCGTCGTTAAAATTCTGGGGTTCTGTCATTCTGATGAGTCAGTTTTTCTCATCTATGAGTACTTGAATAAAGGAAGCTTAGGGGATTTGATTTCAAGTCAGGATTTTCAGTTGAACTGGGGAGTTAGATTGAGGATTGCTATTGGAGTTGCTCAAGGAATTGCTTATCTTCACAAAGATTATGTCCCACACTTGCTTCACAGAAATGTGAAGTCAAACAACATTCTATTGGATGCAAACTTTGAGCCAAAGCTAACTGATTTTGCTCTTGATAGAGTCTTGGGAGAAGCTGCTTTTCAGTCAACTTTGGATTCTGAAGGAGCATCTTCATGTTACAATGCACCAGAATATGGTTACAATAAGAAACCATCAGAACAATTGGATGTATACAGCTTTGGTGTGGTGTTGCTAGAGCTAGTGAGTGGGAGACAAGCAGAGGCAACAGAGTCAAATAATGCCTCACTTGACATAGTAAAATGGGTTAGAAGGAAAGTGAACATAACTAATGGGGTGCAACAAGTTCTTGACCCTAGAATGTCACATACTTGTCACCAAGCAATGATTGGAACATTAGATATAGCTCTTAGTTGCACTTCTGTGGTGCCTGAAAAAAGACCATCAATGATAGAAGTTATTAGAGGTCTTCAGTCCCTTGAGTCAAATGAGGAACACTCTATTCCTGTCTGA 2637 0.3804 MATTFCTYFFILSLTFTIFNLTSQSSTPEKSTLLTFKASIQDSNNALSTWSNTSSNHYCNWTGISCSNIEPFSVTSINLQSLNLSGDISSSICDLPNLSYLNLADNIFNQPIPLHLSQCSFLESLNLSSNLIWGTIPAQISQFGSLKVLDFSRNHIEGNIPESLGSLKNLQVLNMGSNLVSGNVPAIFGNLTKLEVLDLSQNPYLVSEIPEDIGELGSLKELLLQSSSFQGEIPGSLVGLHSLTHLDLSENNLTGLVPKSLASLKNLVSFDVSQNKLSGPFPNGICKGLVINLSLHTNTFTGSISNSSISECESLERFQVQNNGFSGDFPIELFSLPKIKLIRAENNRFSGQIPESISKAVFLEQVQFDNNSFSGKIPQGLGFVKSLYRFSASSNHFYGELPPNFCDSPVMSIVNLSHNSLSGQIPQLKKCRKLVSLSLADNHVTGEIPTSLSELPVLTYLDLSDNNLTGSIPQGLQNLKLALFNVSFNQLSGEVPYSLISGLPASFLEGNPDLCGPGLPNSCSDDYMPRHHNSGLTILTCALISLAFVVGSGIVVGGFVLYRRSCKGNGKEVGVWRSVFFYPLRITENDLLIGMNEKSSLGKAGTFGKAYVVSLPSGELVAVKKLVNFGNQSSKSLKAEVKTLARIRHKSVVKILGFCHSDESVFLIYEYLNKGSLGDLISSQDFQLNWGVRLRIAIGVAQGIAYLHKDYVPHLLHRNVKSNNILLDANFEPKLTDFALDRVLGEAAFQSTLDSEGASSCYNAPEYGYNKKPSEQLDVYSFGVVLLELVSGRQAEATESNNASLDIVKWVRRKVNITNGVQQVLDPRMSHTCHQAMIGTLDIALSCTSVVPEKRPSMIEVIRGLQSLESNEEHSIPV* 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0301 878 Gene3D Phosphorylase Kinase; domain 1 590 671 - -
Lan19g0301 878 SUPERFAMILY RNI-like 233 501 - -
Lan19g0301 878 Gene3D Ribonuclease Inhibitor 288 530 IPR032675 -
Lan19g0301 878 Gene3D Transferase(Phosphotransferase) domain 1 672 876 - -
Lan19g0301 878 ProSiteProfiles Protein kinase domain profile. 596 868 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan19g0301 878 Pfam Leucine rich repeat 218 277 IPR001611 GO:0005515
Lan19g0301 878 Pfam Leucine rich repeat 432 491 IPR001611 GO:0005515
Lan19g0301 878 Pfam Leucine rich repeat 122 179 IPR001611 GO:0005515
Lan19g0301 878 SUPERFAMILY Protein kinase-like (PK-like) 604 864 IPR011009 -
Lan19g0301 878 Gene3D Ribonuclease Inhibitor 26 184 IPR032675 -
Lan19g0301 878 Pfam Protein kinase domain 597 862 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan19g0301 878 SMART LRR_typ_2 240 263 IPR003591 -
Lan19g0301 878 SMART LRR_typ_2 167 190 IPR003591 -
Lan19g0301 878 SMART LRR_typ_2 95 119 IPR003591 -
Lan19g0301 878 SMART LRR_typ_2 455 478 IPR003591 -
Lan19g0301 878 SMART LRR_typ_2 264 288 IPR003591 -
Lan19g0301 878 SMART LRR_typ_2 191 216 IPR003591 -
Lan19g0301 878 PRINTS Leucine-rich repeat signature 243 256 - -
Lan19g0301 878 PRINTS Leucine-rich repeat signature 455 468 - -
Lan19g0301 878 PANTHER OSJNBB0022F23.6 PROTEIN 8 874 - -
Lan19g0301 878 ProSiteProfiles Leucine-rich repeat profile. 457 480 IPR001611 GO:0005515
Lan19g0301 878 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 8 874 - -
Lan19g0301 878 SUPERFAMILY L domain-like 26 286 - -
Lan19g0301 878 Gene3D Ribonuclease Inhibitor 185 287 IPR032675 -
Lan19g0301 878 Pfam Leucine rich repeat N-terminal domain 28 67 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0301 Lan-Chr19 3308461 3312261 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0301 29 868 Receptor kinase-like Gene Family AT5G06940 63.432 0.0 1031
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Lan19g0301 Pkinase 1.3e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0301 - - gmx:100794428 1406.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g0336 9 5188277 5190882 Lan19g0301 19 3308461 3312261 LSH
Lan5g1027 5 23553256 23556357 Lan19g0301 19 3308461 3312261 LSH