Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0298 ATGGAGATAGATAATAGTAATAGTAGTGATGCAAGGTCAAAGAAGATGGAAGATTATGAAGTTATAGAGCAAATTGGTAGAGGGGCATTTGGTTCTGCCTTTCTGGTTCTTCACAACTCTGAGAAAAAGAGGTATGTGCTGAAAAAGATTCGTTTGGCTAAGCAAACAGAGAAGTTCAAAATGACAGCACACCAAGAGATGAACCTGATTGCAAAACTAAAAAATCCATATATCGTTGAGTACAAAGATGCTTGGGTGGAGAAGGAGGACCATATATGTATTATAACTGGATATTGTGAAGGAGGTGACATGGCTGATAAAATAAAGAGAGCTCGAGGATCATTATTTCCCGAAGAGAAGGTCTGCAAATGGCTGACTCAATTGTTGATAGCTGTGGACTACTTGCACTCTAATCGTGTAATCCACAGAGATCTTAAGTGTTCCAACATATTCCTCACTAAAGACAAGAACATTCGGCTTGGTGACTTTGGTCTTGCAAAGCGACTCAATACCGAAGGCCTTACTTCCTCGGTTGTTGGAACTCCAAGTTACATGTGTCCGGAGCTCCTTGCTGATATACCATATGGTTATAAATCCGATATGTGGTCGCTTGGTTGCTGCTTGTTTGAGATTGCTGCACATCAACCTGCATTTCGTGCTCCGGACATGGCTGGACTTATCAATAAAATAAAAAGATCCTCCATTTCTCTACTGCCAATTGTTTATTCTTCCACACTGAAACAAATTATCAAGAGCATGCTGAGGAAAAATCCAGAACATAGACCAACAGCAGCTGAATTGTTAAGACATCCTCATTTACAACCTTATGTTCTTCGCTGTCATAATGCATCATCTAATGTTCTTCCAGTACGTCCCTTAGTTAACTCAACGGATAAAACAAGATCACCTCATAAATCTAGTGGTGGCAAGGACCATGGGGATAAGGAAGCTGGATTAGTAAATTGTTTGGATCGAGTTCATCCAATTGAGGGAAATGGAGATGTACGGCCAAGCAATCTTCCTAATGACGGTGAGCTAACAGTCTCAACCAGTGCAGAAGACAACTTTGAGACCAAGATAGTTTATCTTACCAGCTACACAGTGGAATCTTCTACTAGTATCAGTGGCTCAAAAGATGTGTCAACGGCATCTGAACCAACTATTCGCAGTGTGTTCAAGGACACAGACTTTAAAAGTAGACCCGCAAGGGAAACAGTTGACAACGAGATCATTTCATTGAGTACACAAGATTTCGTGCGTGTGGAACAAGGACTTGCTCTGGAACATTTTCAAAAATTAGAAGTGTTTGACATAAATGCAGTGACTGCAATAGGTGAAGATTATTTTTCCAATGAAGTTTTTAATAATTTTGAGGCACATAGGATAGATGCCAAACTTGAGGACTCCGGGAAATCAACAATGTCTAGTGCAGGCAGTAGCAGCATTGATAAAGATAAGTCCATTGATACAGCCAGCACTAATAAAGATAAGTCCACTGATGAGGAGGAAAATTCATCACTACTTGTGCATCCTATTAATGCTGAAAATGACACAGTATCTGAAAACTGCTTTAAGAAAAACGAAAACGCCGATGTTTTTACAGAAGTTTTGCATATAAACTGCGTCACATCTGAGAGTAATGACACACTTCCATTTAAGGATGAAGACACAGCAAAATCACACACCACTACTTGCCCCATGGGTGAAGATGATAGCACTGTCGTGGTTGATCCGACGACACTGAGTGGCATTTCGTTAAGTACAGTTACTGCAGCAGTTGCTGATGAAACAACCAAGACTACATTGGATAATCCATTGCAGCAAAGAGCTGATGCTTTGGAATCTCTGCTTGAGTTATGTGCTCAGCTACTTAAGCAAGATAGACTTGAAGAGCTTGCTGGTGTTCTAAGACCATTTGGAAAAGAAGCTGTTTCATCCAGAGAAACAGCAATATGGTTAACAAAGAGCCTCTTATCTGCTCAAAAGTTGAATCCTAAAACCTAG 2004 0.4032 MEIDNSNSSDARSKKMEDYEVIEQIGRGAFGSAFLVLHNSEKKRYVLKKIRLAKQTEKFKMTAHQEMNLIAKLKNPYIVEYKDAWVEKEDHICIITGYCEGGDMADKIKRARGSLFPEEKVCKWLTQLLIAVDYLHSNRVIHRDLKCSNIFLTKDKNIRLGDFGLAKRLNTEGLTSSVVGTPSYMCPELLADIPYGYKSDMWSLGCCLFEIAAHQPAFRAPDMAGLINKIKRSSISLLPIVYSSTLKQIIKSMLRKNPEHRPTAAELLRHPHLQPYVLRCHNASSNVLPVRPLVNSTDKTRSPHKSSGGKDHGDKEAGLVNCLDRVHPIEGNGDVRPSNLPNDGELTVSTSAEDNFETKIVYLTSYTVESSTSISGSKDVSTASEPTIRSVFKDTDFKSRPARETVDNEIISLSTQDFVRVEQGLALEHFQKLEVFDINAVTAIGEDYFSNEVFNNFEAHRIDAKLEDSGKSTMSSAGSSSIDKDKSIDTASTNKDKSTDEEENSSLLVHPINAENDTVSENCFKKNENADVFTEVLHINCVTSESNDTLPFKDEDTAKSHTTTCPMGEDDSTVVVDPTTLSGISLSTVTAAVADETTKTTLDNPLQQRADALESLLELCAQLLKQDRLEELAGVLRPFGKEAVSSRETAIWLTKSLLSAQKLNPKT* 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0298 667 MobiDBLite consensus disorder prediction 468 512 - -
Lan19g0298 667 MobiDBLite consensus disorder prediction 469 487 - -
Lan19g0298 667 Gene3D Transferase(Phosphotransferase) domain 1 101 314 - -
Lan19g0298 667 SUPERFAMILY Protein kinase-like (PK-like) 16 304 IPR011009 -
Lan19g0298 667 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
Lan19g0298 667 Gene3D Phosphorylase Kinase; domain 1 2 98 - -
Lan19g0298 667 ProSitePatterns Protein kinases ATP-binding region signature. 25 48 IPR017441 GO:0005524
Lan19g0298 667 MobiDBLite consensus disorder prediction 488 504 - -
Lan19g0298 667 MobiDBLite consensus disorder prediction 292 316 - -
Lan19g0298 667 CDD STKc_Nek 18 273 - -
Lan19g0298 667 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 504 650 - -
Lan19g0298 667 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 13 492 - -
Lan19g0298 667 Pfam Protein kinase domain 19 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan19g0298 667 ProSiteProfiles Protein kinase domain profile. 19 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan19g0298 667 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 13 492 - -
Lan19g0298 667 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 504 650 - -
Lan19g0298 667 SMART serkin_6 19 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0298 Lan-Chr19 3284139 3290462 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0298 12 274 MAP Kinase Kinase Kinase AT3G13530 31.698 1.70e-34 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Lan19g0298 Pkinase 3.8e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0298 K08857 - gmx:100793379 953.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g1024 5 23530566 23536578 Lan19g0298 19 3284139 3290462 LSH
Lan16g0898 16 15811937 15816292 Lan19g0298 19 3284139 3290462 LSH