Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0296 ATGGCTGACCCTTACTCTAATTTCCTCTCTTCTCCTCCATCTTCACCTTTCTTCCAATTCAACCATTTTTCATCTTCTTCTCCAAACCCTTCTCAGCATCATCCACATCCTTATCTGCATAACTTCATCAACCCCACAAAAGATGACACAACCACCACCTTTTTACACTTTCATCACCACCACCACCACCACCTTCAAACTCAAACAACTACTTCTTATTTTTCACCTCCTTCTCCTCCTTTAAGAGAAGAACTTCCTCTCTTGACACAAAGCCCAGCAAAGCAAAAAGAGAATAATAATAATAATAATATTCATAATGAAGAACAAGATCAACAAGAACAACAATATCTTTCTTGCACTGCTATGGATGTTGAAGAGAGGATCTACCTTCACAAAGAAGAAGAAGAACATGAAGATGATACCACTGTTACTGTTGCACTTCACATAGGTTTACCAAGCCCTAGTGCTGCTGAGATGGCATCTATGCTCTCCTCTAATAATTGTTCTTCAGAGATCACTGATAAAGAACAACATGGTGGTGGTGATGGTGGCAATGAGGATTCTTCTGGGTTCATGTTCAACAACAGGCTCAACAAGGGACAGTACTGGATCCCTACTCCCTCTCAGATTCTCATTGGTCCTACTCAGTTCTCTTGTCCTGTTTGCTGTAAAACTTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAGTACAGAAAAGGGCCTGAATCACTGAGGGGTACACAACCAACAGCAATGCTAAGGCTTCCATGTTATTGTTGTGCACCAGGGTGCAGAAACAACATTGATCACCCTAGAACAAAGCCTCTCAAAGATTTTAGAACACTTCAAACACATTACAAGAGGAAGCATGGGATTAAGCCCTTCATGTGTAGAAAATGTGGTAAAGCCTTTGCAGTTAGGGGTGATTGGAGAACTCATGAAAAGAATTGTGGGAAGCTTTGGTATTGTATTTGTGGCTCTGATTTCAAGCACAAAAGGTCACTTAAAGATCATATAAAAGCTTTTGGAAATGGCCATGCAGCTTATGGGATTGATGGCTTTGAAGAAGAAGATGAACCAGCTTCTGAAGTAGAACAAGATAATGATGATTCCACCACCCAGTAA 1143 0.4086 MADPYSNFLSSPPSSPFFQFNHFSSSSPNPSQHHPHPYLHNFINPTKDDTTTTFLHFHHHHHHHLQTQTTTSYFSPPSPPLREELPLLTQSPAKQKENNNNNNIHNEEQDQQEQQYLSCTAMDVEERIYLHKEEEEHEDDTTVTVALHIGLPSPSAAEMASMLSSNNCSSEITDKEQHGGGDGGNEDSSGFMFNNRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLRLPCYCCAPGCRNNIDHPRTKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAYGIDGFEEEDEPASEVEQDNDDSTTQ* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0296 380 Gene3D Classic Zinc Finger 279 354 - -
Lan19g0296 380 ProSiteProfiles Zinc finger C2H2 type domain profile. 217 244 IPR013087 -
Lan19g0296 380 SUPERFAMILY beta-beta-alpha zinc fingers 283 321 IPR036236 -
Lan19g0296 380 PANTHER ZINC FINGER PROTEIN WIP2 1 376 IPR043584 GO:0003700|GO:0010468
Lan19g0296 380 MobiDBLite consensus disorder prediction 65 84 - -
Lan19g0296 380 SMART c2h2final6 301 321 IPR013087 -
Lan19g0296 380 SMART c2h2final6 217 239 IPR013087 -
Lan19g0296 380 Gene3D Classic Zinc Finger 216 239 - -
Lan19g0296 380 MobiDBLite consensus disorder prediction 168 190 - -
Lan19g0296 380 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 1 376 - -
Lan19g0296 380 Coils Coil 94 114 - -
Lan19g0296 380 MobiDBLite consensus disorder prediction 361 380 - -
Lan19g0296 380 ProSiteProfiles Zinc finger C2H2 type domain profile. 301 321 IPR013087 -
Lan19g0296 380 MobiDBLite consensus disorder prediction 93 114 - -
Lan19g0296 380 ProSitePatterns Zinc finger C2H2 type domain signature. 219 239 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0296 Lan-Chr19 3240528 3243385 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0296 1 380 C2H2 Transcription Factor Family AT3G57670 60.794 7.48e-145 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan19g0296 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0296 - - gmx:100813583 491.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g0333 9 5135842 5138968 Lan19g0296 19 3240528 3243385 LSH
Lan5g1023 5 23507312 23510363 Lan19g0296 19 3240528 3243385 LSH