Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0285 ATGGGTAATTGTTGTGTAACACCACGAGTTCAACCAAGAGAAAGGAACCATAAGAAGAAGAAAGTGAAGGAAAACCCTTTCGCCGTTGATTACATAAACGACACCGTTTTAACAAAACTAACCGTTTTGAGGAACCCAACGGGTAAAGAAATCGAGCTCCAATACGAGCTGGGTCGAGAACTGGGTCGGGGTGAGTTTGGTGTAACGTATCTATGTACTGATAAGGAAACTGGTGAGGACTTAGCATGTAAACAGATTTCGAAGAATAAGCTTAGAACTGCTATTGATATTGAAGATGTGAGAAGAGAGGTTGAGATAATGAAGCACTTGCCAAAACATCCTAACATTGTGACTTTGAAAGATACTTATGAGGATGCTAATGCTGTTCATCTTGTTATGGAGCTTTGTGAGGGTGGCGAGCTTTTCGATCGAATTGTGGCGCGCGGACACTATACTGAACGTTCTGCGGCTCTTGTCATTAAGACCATTGTTGAAGTTGTGCAGATGTGCCACAAACATGGTGTGATGCATCGGGATCTCAAACCTGAAAACTTTCTGTTTGCAAATAGCAAGGAAACGGCAGCTCTGAAGGCTATTGATTTTGGATTGTCAGTGTTCTTTAAATCCGGTGAAAGATTTAATGAGATTGTTGGAAGTCCATATTACATGGCACCAGAGGTATTAAAGCGAAACTATGGCCCGGAAGTAGATATCTGGAGTGCTGGTGTAATTCTATACATCTTACTCTGTGGTGTCCCACCATTTTGGGCAGAAACTGAACAAGGAGTTGCACAAGCAATAATACGATCTGTTGTTGATTTCAAAAGAGACCCTTGGCCAAAAGTTTCTGATAATGCAAAAGACCTTGTGAAGAAGATGCTTAATCCTGATCCGAAGCGGCGGCTTACTGCACAGGCTGTGTTAGATCATCCATGGATACAAAATGCGTACAAAGCTCCTAATGTCTCATTAGGAGAATCTGTTAGAGCAAGGCTCCAGCAATTTTCTGTAATGAACAAGCTTAAGAAAGTGGCTTTGAGGGTGATTGCCGAGCATTTGTCAGTTGAAGAAGCTGCTGGATTAAAACAAAGGTTCCAGATTTTGGATATAGGCAACAGAGGCAAGATTAATATGGATGAACTACTAGTAGGGATGCAGAAACTAGGCCATCAACTTCCTGATGAAGATATCAATAATATTATGGAAGCTGGTGATGTAGATAATGATGGGTACCTAGATTACGGAGAGTTTGTAACCATTTCCGTTCATATGAGAAAGATGGGAAATGAAGAGCACCTTCACAAAGCCTTCCAATATTTTGATGAGGATCAAAGTGGTTATATTGAAATCGAGGAGTTGCGTAAAGCCCTATCTAATGAGGTTGGTGTGAACAATGAAGTCATTGATGCAATTATGCATGATGTGGACACAAACAAGGATGGAAAAATAAGTATTGAGGAATTTGCTGCAATGATGAAGGCTGGCACGGATTGGAGAAATGTATCAAGGCAGTATTCAAGAGAAAAGTTCAACAATCTCAGCCAAAAATTGTTCAAGGATGGTTCATTACAATTTAAAAAATGA 1584 0.4053 MGNCCVTPRVQPRERNHKKKKVKENPFAVDYINDTVLTKLTVLRNPTGKEIELQYELGRELGRGEFGVTYLCTDKETGEDLACKQISKNKLRTAIDIEDVRREVEIMKHLPKHPNIVTLKDTYEDANAVHLVMELCEGGELFDRIVARGHYTERSAALVIKTIVEVVQMCHKHGVMHRDLKPENFLFANSKETAALKAIDFGLSVFFKSGERFNEIVGSPYYMAPEVLKRNYGPEVDIWSAGVILYILLCGVPPFWAETEQGVAQAIIRSVVDFKRDPWPKVSDNAKDLVKKMLNPDPKRRLTAQAVLDHPWIQNAYKAPNVSLGESVRARLQQFSVMNKLKKVALRVIAEHLSVEEAAGLKQRFQILDIGNRGKINMDELLVGMQKLGHQLPDEDINNIMEAGDVDNDGYLDYGEFVTISVHMRKMGNEEHLHKAFQYFDEDQSGYIEIEELRKALSNEVGVNNEVIDAIMHDVDTNKDGKISIEEFAAMMKAGTDWRNVSRQYSREKFNNLSQKLFKDGSLQFKK* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0285 527 CDD EFh 432 493 IPR002048 GO:0005509
Lan19g0285 527 ProSiteProfiles EF-hand calcium-binding domain profile. 356 391 IPR002048 GO:0005509
Lan19g0285 527 CDD EFh 361 420 IPR002048 GO:0005509
Lan19g0285 527 PANTHER SERINE/THREONINE-PROTEIN KINASE 12 508 - -
Lan19g0285 527 Gene3D Phosphorylase Kinase; domain 1 57 140 - -
Lan19g0285 527 ProSitePatterns Protein kinases ATP-binding region signature. 61 84 IPR017441 GO:0005524
Lan19g0285 527 ProSitePatterns Serine/Threonine protein kinases active-site signature. 175 187 IPR008271 GO:0004672|GO:0006468
Lan19g0285 527 ProSitePatterns EF-hand calcium-binding domain. 405 417 IPR018247 -
Lan19g0285 527 CDD STKc_CAMK 54 312 - -
Lan19g0285 527 SMART efh_1 396 424 IPR002048 GO:0005509
Lan19g0285 527 SMART efh_1 432 460 IPR002048 GO:0005509
Lan19g0285 527 SMART efh_1 360 388 IPR002048 GO:0005509
Lan19g0285 527 SMART efh_1 467 495 IPR002048 GO:0005509
Lan19g0285 527 ProSitePatterns EF-hand calcium-binding domain. 476 488 IPR018247 -
Lan19g0285 527 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 32-LIKE 12 508 - -
Lan19g0285 527 Pfam EF-hand domain pair 430 493 IPR002048 GO:0005509
Lan19g0285 527 Pfam EF-hand domain pair 361 420 IPR002048 GO:0005509
Lan19g0285 527 Pfam Protein kinase domain 55 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan19g0285 527 Gene3D - 322 495 - -
Lan19g0285 527 ProSiteProfiles EF-hand calcium-binding domain profile. 428 462 IPR002048 GO:0005509
Lan19g0285 527 ProSiteProfiles Protein kinase domain profile. 55 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan19g0285 527 ProSiteProfiles EF-hand calcium-binding domain profile. 392 427 IPR002048 GO:0005509
Lan19g0285 527 ProSiteProfiles EF-hand calcium-binding domain profile. 463 498 IPR002048 GO:0005509
Lan19g0285 527 Gene3D Transferase(Phosphotransferase) domain 1 141 321 - -
Lan19g0285 527 SUPERFAMILY EF-hand 337 504 IPR011992 -
Lan19g0285 527 SUPERFAMILY Protein kinase-like (PK-like) 54 324 IPR011009 -
Lan19g0285 527 SMART serkin_6 55 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0285 Lan-Chr19 3093155 3099578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0285 1 526 EF-hand Containing Proteins AT5G19450 73.258 0.0 819
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lan19g0285 Pkinase 5.2e-78 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0285 K13412 - rcu:8260316 857.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g1013 5 23407337 23413878 Lan19g0285 19 3093155 3099578 LSH