Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0272 ATGGATGGAGTTAGTGATAATAAAGGGTTGTTGGAATATGCAAGGAAGTGCACTCCACCACCCTTCTTGTTGAAGACCTACATGCTTGTGGAGGATCCGGCCACCGATGATGTCGTATCGTGGAATGCCGAAGGCACGGCGTTTGTGGTGTGGCAACCGGCGGAGTTTGCCCGTGATCTCCTCCCAACACTCTTCAAACATAGCAACTTCTCTAGCTTTGTCCGGCAGCTAAATACCTATGGTTTTCGTAAAGTTGCAACAAGTAGATGGGAATTTTGCAACGAAAAGTTCAAGAAAGGTGAAAGAGAACTTCTATGTGAGATTAGAAGAAGAAAAGCATGGAGAATAAAGCAACAACAATCTACTACACCAAACCAAGTTACAACACCACCCCAAGATTCTGATGAAGATCAAAGATCTGCATCAACTTCATCATCTTCAGGATACACTACTCTTATTGATGAAAACAAGAGACTGAAGAAGGAGAATGGGGTGTTGAGTTCTGAGTTAACAAGCATGAGAAACAAGTGTATGGAACTGCTTGATTTAGTGGCTAAATATAGTAATAATAATTCAAATCATGCAAATAAGGAAGAGAAGAAGAATAAGAAAGAAGATGAAAGACCAATGCTTTTTGGAGTGAGATTGGATGTTGTTCAAGGAGAAAAGAGGAAGAGATCTTCTGAGATTAGTGAAAAAAGTGGAAGCATTTTGCTGTCTCAGTCATGA 729 0.406 MDGVSDNKGLLEYARKCTPPPFLLKTYMLVEDPATDDVVSWNAEGTAFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSRWEFCNEKFKKGERELLCEIRRRKAWRIKQQQSTTPNQVTTPPQDSDEDQRSASTSSSSGYTTLIDENKRLKKENGVLSSELTSMRNKCMELLDLVAKYSNNNSNHANKEEKKNKKEDERPMLFGVRLDVVQGEKRKRSSEISEKSGSILLSQS* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0272 242 MobiDBLite consensus disorder prediction 117 152 - -
Lan19g0272 242 Gene3D - 14 112 IPR036388 -
Lan19g0272 242 Coils Coil 156 176 - -
Lan19g0272 242 SUPERFAMILY "Winged helix" DNA-binding domain 18 111 IPR036390 -
Lan19g0272 242 MobiDBLite consensus disorder prediction 193 231 - -
Lan19g0272 242 SMART hsfneu3 18 111 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan19g0272 242 Pfam HSF-type DNA-binding 22 111 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan19g0272 242 MobiDBLite consensus disorder prediction 190 242 - -
Lan19g0272 242 PRINTS Heat shock factor (HSF) domain signature 22 45 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan19g0272 242 PRINTS Heat shock factor (HSF) domain signature 60 72 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan19g0272 242 PRINTS Heat shock factor (HSF) domain signature 73 85 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan19g0272 242 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 6 242 IPR027725 -
Lan19g0272 242 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-3 6 242 - -
Lan19g0272 242 ProSitePatterns HSF-type DNA-binding domain signature. 61 85 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0272 Lan-Chr19 2961610 2964337 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0272 19 187 HSF AT2G41690 59.444 4.00e-70 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lan19g0272 HSF_DNA-bind 7.9e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0272 K09419 - gmx:100802739 320.857