Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0250 ATGGCAATATGGCCCTTAGAATTTGAGCCTATAAGTCATAATGATAACGACAATTACTTCACTTCTTATTACTACTCATTTCCTCATCAATTTTCTTCACTTGAGTCACAGGTTGAGGTTCAAACGTCTACACCACCCTCTGTCCCTAACATGGTGAAGAAGCTCAACCACAATGCTAGTGAACGTGATCGCCGTAAGAGAATCAATATCTTGTATTCCTCACTTTCTTCAGTTCTTCCTTTGGCAGATCAAATGAAGAAGATGAGCATTCCTGGAACAATTTCACAAGTCCTCAAATACATACCTAAATTACAAAAGCAAGTGGAAGGACTAACTAAGAAGAAGGAGGAACTTTTATTGAGAATTTCACAGCAAGTAGATGCACTAATGAACAAAGAATCTCAAAGAAAAATTGCACCTCATAGTTATGCTTTTGTAGTTTCAACAAGTAGATTCAATGATAATGAGGCTTCTATTCAGATTTCCACTTGTGAGGAGGCCAACAAGATTTCATTCTCTGAGATCTTGTTATGTTTAGAGAATATTGGGCTTGTCCTTCTAAATGCTTCTTCATCTGGAACTTTTGGAGAAAGGATCTTCTATAACTTGCATCTCCAAGTGGAGAAAACATACAGATTAGAGTCTCAGATTCTAAGTGAAATGCTTTTGTCAATGTTAGAGAAGAAGATCTAA 693 0.3665 MAIWPLEFEPISHNDNDNYFTSYYYSFPHQFSSLESQVEVQTSTPPSVPNMVKKLNHNASERDRRKRINILYSSLSSVLPLADQMKKMSIPGTISQVLKYIPKLQKQVEGLTKKKEELLLRISQQVDALMNKESQRKIAPHSYAFVVSTSRFNDNEASIQISTCEEANKISFSEILLCLENIGLVLLNASSSGTFGERIFYNLHLQVEKTYRLESQILSEMLLSMLEKKI* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0250 230 CDD bHLH_AtORG2_like 53 127 - -
Lan19g0250 230 Gene3D - 49 136 IPR036638 GO:0046983
Lan19g0250 230 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 53 123 IPR036638 GO:0046983
Lan19g0250 230 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 52 104 IPR011598 GO:0046983
Lan19g0250 230 PANTHER TRANSCRIPTION FACTOR ORG2-RELATED 4 227 - -
Lan19g0250 230 SMART finulus 58 110 IPR011598 GO:0046983
Lan19g0250 230 Pfam Helix-loop-helix DNA-binding domain 53 105 IPR011598 GO:0046983
Lan19g0250 230 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 4 227 IPR015660 GO:0003700|GO:0006357
Lan19g0250 230 Coils Coil 101 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0250 Lan-Chr19 2766519 2767653 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0250 25 228 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 48.309 1.02e-53 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan19g0250 HLH 4.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0250 - - vra:106752555 248.054
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0975 5 22958546 22961753 Lan19g0250 19 2766519 2767653 LSH