Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0225 ATGGCGAATCCATTTGAATTTCAATTATACGTATACAACGAGAACGTACTTGAAAGTGTAGGTCCAGCAGCGTTTGTAATCTCCGACGATGAAGAAGAAGAAGAAGATGAGGACGATGATGAGGACGATGATGAAGATTACGTCGCCGTTTTACCATCTTCTAGGGTTTCGGAAAATTGCGATGAAGAAGAGCGGAACAAGCGGCGTAGAACGGAAGTAGGAGAAGCTTCGTCTTCACCAATCGCAATTGAGAGCAGCCAAGGGAGTGAGTGGAGTCGCAGCGAGATTGATGGACTACTTTGTCCTATTTGCATGGAACCTTGGGTCAACAATGGCGAACACCATATCAGTTGTCTTCCTTGTGGACACATATATGGTATGTCTTGCATCAAAAAATGGCTTCAACAGAGAAAAAAGCACGGCAAGTGTCCTCAATGCAATAGGAAATGTTCCTTGAAGGATGTGAGGAAGCTCTATGCTTCACGATTAGTTGCGGTTGATGAAGAATCTCAGAAGAGGATTCAATCACTTGAGGCCAAATGTGCAGCCCTTGAAAGTAAGGGTGATGATTGGCACAAGAAAGAAGCTGGATGGCAGAAGAGAAAAGCTGCATTACATCTTCAAGTTCAGAAGCTTGCCGAGAAAAACATTTATTTGGAGCAGCTGCTAGTAGATATGCAGAGCAGGCAATCTGAAATTGGGAACAATGGCTCAAGCTTCTATGGAAAGGGATCCTTTTGCAATTTCGAATTGCAGAAAGCATTTGATCTGAGTGGTGCACGCGTATTTGATATGGACACTTCGAAGCAAATTATATTAGTTGCACAGAAGCCAAAGGTGATAGGTGGATTTCACACACTAACTAAATTGAGCTTGATAGCTCCATTTGAGATGGAAGATATCTTACTGCCTTCCACTACAAATGGTATTAGAGATCTACATATTTCACCTTCTAATGGTAGCCTGGCCCTCTATGCTTCAGTAGGAAAGAAATTATCAGTGATAAGCTTGGAGAGCAACAGTCCTGTTATAAATTATGATTTGAAGTGTCCTGCTTGGTCATGCTCATGGGATCTCAACAGTTCACATTACTTATATGCTGGACTGCAGAATGGTTGTGTCTCTGTGTTTGATATGCGCCAAACCGTGGGACCTGTAAAATCTTTATTTGGGTTGACTAGCAACCCTGTTCATACTTTACAATCACTTGGACAAACTTCAAGTCTTTCAGCTGGTGGTAGGACCATCCTATCTGCAGCTGCCATTGGAGTTTCTCAGTGGAACTTTGATTCTGAGGAAGGGCCGTCTCTTGTTCCTAATACTGACAGTCAAGGAGTTTGTATATCACTTGCCTATTGCCCTAGCAGTGATGATGTTGTTGTTTCATACCGTCCGAAAGTTGACATGTCTATGGAAGTGCCTCTTTCTCAACAATTGCTCAGTCCTCTAGGTACTGGACAAGGAGTACAGGGCTCTCATGTATTGTTCAAGAGAGACGATAGTCACCATTTCCAAATGATGGGTTCCTCATGCGCCAATGTAAGTAAAATTCGACTACCAAAATGTGCGGTTGTTGAGTTAGAGGATCAGAGAAGATTGTTTGCTTGTGGAGATGAAGTTACTGGCGAACTGGTATTGCATGAGTTGCCATCTTTTAGAGTGCTTCAGCAATTCAAATTACCTGCTCATGCTCGTGATATCAAGTACTCACCTAGCCATGGAATACTTGGTTGTTTAAGTGAGAAAACATTGCAGCTTTTCCATGCCAAGTGA 1773 0.4264 MANPFEFQLYVYNENVLESVGPAAFVISDDEEEEEDEDDDEDDDEDYVAVLPSSRVSENCDEEERNKRRRTEVGEASSSPIAIESSQGSEWSRSEIDGLLCPICMEPWVNNGEHHISCLPCGHIYGMSCIKKWLQQRKKHGKCPQCNRKCSLKDVRKLYASRLVAVDEESQKRIQSLEAKCAALESKGDDWHKKEAGWQKRKAALHLQVQKLAEKNIYLEQLLVDMQSRQSEIGNNGSSFYGKGSFCNFELQKAFDLSGARVFDMDTSKQIILVAQKPKVIGGFHTLTKLSLIAPFEMEDILLPSTTNGIRDLHISPSNGSLALYASVGKKLSVISLESNSPVINYDLKCPAWSCSWDLNSSHYLYAGLQNGCVSVFDMRQTVGPVKSLFGLTSNPVHTLQSLGQTSSLSAGGRTILSAAAIGVSQWNFDSEEGPSLVPNTDSQGVCISLAYCPSSDDVVVSYRPKVDMSMEVPLSQQLLSPLGTGQGVQGSHVLFKRDDSHHFQMMGSSCANVSKIRLPKCAVVELEDQRRLFACGDEVTGELVLHELPSFRVLQQFKLPAHARDIKYSPSHGILGCLSEKTLQLFHAK* 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0225 590 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 30 587 - -
Lan19g0225 590 CDD mRING-C3HGC3_RFWD3 97 147 - -
Lan19g0225 590 MobiDBLite consensus disorder prediction 23 90 - -
Lan19g0225 590 MobiDBLite consensus disorder prediction 27 47 - -
Lan19g0225 590 SUPERFAMILY WD40 repeat-like 304 587 IPR036322 GO:0005515
Lan19g0225 590 ProSiteProfiles Zinc finger RING-type profile. 101 147 IPR001841 -
Lan19g0225 590 PANTHER RFWD3 PROTEIN 30 587 IPR037381 GO:0004842|GO:0005634|GO:0016567|GO:0036297
Lan19g0225 590 MobiDBLite consensus disorder prediction 57 74 - -
Lan19g0225 590 Coils Coil 167 187 - -
Lan19g0225 590 Gene3D - 258 471 IPR015943 GO:0005515
Lan19g0225 590 SUPERFAMILY RING/U-box 91 153 - -
Lan19g0225 590 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 218 IPR013083 -
Lan19g0225 590 Pfam Ring finger domain 101 147 IPR001841 -
Lan19g0225 590 SMART ring_2 101 146 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0225 100 152 C3H Transcription Factor Family AT1G51930 38.889 2.40e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0225 K15691 - gmx:100818898 712.99