Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0206 ATGATCATGACCAAGTCTAATTCTTCTAGTGAAAGGAATGGATTGAAGAAAGGTCCTTGGACTCCAGAGGAAGATCAGAAACTCACAGATTACATTCAGAAACATGGACATGGGAAATGGCGTATCCTTCCAAAAAATGCAGGACTAAAAAGATGTGGAAAGAGTTGTAGGCTTCGTTGGGCTAACTACTTGAGGCCTGATATAAAGAGAGGGAAATTCTCATTAGAAGAAGAAGAAACCATCATCCACTTACATAGTATGATGGGAAACAAATGGTCTACAATTGCTGCAAACTTGCCTGGAAGAACAGATAATGAGATTAAGAATTATTGGAATACCCGCATCAAGAAAAATCTATTGAAGATGGGAATAGATCCAGTGACTCACACACCAAGCCTTGAGGTTCTTCAACTTTCATCTATTCTCAGCTCTTTATACACTTCACCCCAATTGAATTATCCTAGTCTTTTTGGGATGAGTGGTAGTATGGTAAATAACCAAAGCCAAATGCTAAATTTGCTCACAACTTTTATATCAAGTCAAAGTAGAAACCAAAATGTTATGAATAATAATAATATTTTGCATCAAAACCAAATTGGTATAAGTACTACTAGCCCTATATTGCAAAACCAACCTCAATGTTCTCAATCAATGCAACTTAACTCTATTCAAGCCTTCCAATCCAACCAACTTCAAGTCCAAGTTCAAGAAAATCACCAAAATAATACTACTATGCCAAATTTGTGGCAATATTATGGAGGTTATATTTCAGATCAACAAGAGGCACAATCATCATCAACTATGCAAAGTTTCTCTTTGCCTAAGTTCAACTCTAGTGTCAACAATATCTTGGAAAATCAGATTTTATCATGCACCAATGAAATAATGCCAAATTTCAACTTAAACTCAGTGCTATCTTCCACACTTTCTTATTCTTCCCCTGGTACTTTGAATTCATCATCTTCAACTGAAGATGAAAGGGATACCTATAATAGTAACATGTTGATGTATAATATCTCAAATGGCTTCAATGATTCTGGACTTATGTGA 1050 0.3543 MIMTKSNSSSERNGLKKGPWTPEEDQKLTDYIQKHGHGKWRILPKNAGLKRCGKSCRLRWANYLRPDIKRGKFSLEEEETIIHLHSMMGNKWSTIAANLPGRTDNEIKNYWNTRIKKNLLKMGIDPVTHTPSLEVLQLSSILSSLYTSPQLNYPSLFGMSGSMVNNQSQMLNLLTTFISSQSRNQNVMNNNNILHQNQIGISTTSPILQNQPQCSQSMQLNSIQAFQSNQLQVQVQENHQNNTTMPNLWQYYGGYISDQQEAQSSSTMQSFSLPKFNSSVNNILENQILSCTNEIMPNFNLNSVLSSTLSYSSPGTLNSSSSTEDERDTYNSNMLMYNISNGFNDSGLM* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0206 349 Gene3D - 16 69 - -
Lan19g0206 349 MobiDBLite consensus disorder prediction 1 25 - -
Lan19g0206 349 MobiDBLite consensus disorder prediction 1 15 - -
Lan19g0206 349 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 64 IPR017930 -
Lan19g0206 349 CDD SANT 72 113 IPR001005 -
Lan19g0206 349 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 3 337 - -
Lan19g0206 349 CDD SANT 19 64 IPR001005 -
Lan19g0206 349 SMART sant 16 66 IPR001005 -
Lan19g0206 349 SMART sant 69 117 IPR001005 -
Lan19g0206 349 SUPERFAMILY Homeodomain-like 14 111 IPR009057 -
Lan19g0206 349 Gene3D - 72 118 - -
Lan19g0206 349 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 119 IPR017930 -
Lan19g0206 349 PANTHER TRANSCRIPTION FACTOR MYB30-LIKE 3 337 - -
Lan19g0206 349 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Lan19g0206 349 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
Lan19g0206 349 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Lan19g0206 349 Pfam Myb-like DNA-binding domain 70 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0206 Lan-Chr19 2041458 2043906 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0206 11 349 MYB Transcription Factor Family AT4G21440 47.042 4.15e-88 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan19g0206 Myb_DNA-binding 5.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0206 K09422 - gmx:100820398 420.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan19g0206 19 2041458 2043906 Lan9g0290 9 3835363 3838019 LSH