Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0201 ATGAACCAGAAGGCCAATGTTTCAAAAGAACTCAACGCCAAGCACAAGAAGATACTGGAAGGGCTTCTTAAATTACCAGACAATAGGGAATGTGCTGATTGCAAAGCTAAAGGTCCAAGATGGGCTAGTGTAAATCTTGGCATCTTTATATGCATGCAGTGCTCAGGAATTCATCGAAGTTTGGGGGTACATATTTCAAAGGTTCGTTCTGCAACTCTGGACACTTGGCTTCCAGAGCAAGTTGCATTCATTCAATCAATGGGAAATGAGAAAGCAAATAGTTATTGGGAAGCAGAATTACCTCCACGTTATGATAGAGTTGGAATTGAGAATTTCATTCGTGCAAAGTATGAAGAGAAGAGATGGGTTTCACGGGATGGGAAACCGAAATCACCATCTAGACTGCAGGAAGAGAAAATTCAGTCACATTGGCAGAGGCCTGTGGAAAGAAGCAGTCAAGGTTATGCAGCTGGTTCTGAGATTTCGTTTCAGGAAAGGAAGAAAATCCAACCATCAAATGCAATTCCTGCCACAAGAGTTAGTGTTCCTTCTCCTCCCAAAGGGCCTGATCAGGTAATCCCTATTACCAAACCTCAGCATGTTCAGAAAGTGGAACCAGTAGCACCACAACCACCAGCTGAAACTACAAATCAGGCTACAGATACTGCTCAAAATATTCCTCCAAAAGTTGACTATGCTACAGACCTTTTCAACATGTTGTCTATGGATGGCCCAAGTGAAAATGGCTCAGAAGCAGCTTCTACTGCTGATGATAATAATTGGGCAGGTTTTCAGTCTTCTGCAGAGGCGTCAACAGCCGAGAAGACTAGTCAGTTGAAACCATTTGAGAGTACTCCCCAATCCGCATCTGGAATTGAGGATCTATTTAAAGATTCACCTTCACTTACCCCAAGCTTAGCTCCTGGAAAACCAGAGAAAGATGTAAAAAATGATATCATGAGCCTCTTCGAGAAGAGCAATATGGTTTCTCCATTTGCAATGCATCAACAGCAGCTGGCCATGCTAGCACAGCAACAGTCTCTTATAATGGCTGCTGCAACTAAGTCTACTGCTGGGAATCCCATATATACTGCTAGTACACAACATCCCAGCTCCAATATTCCTGGACAGAATTGGCCAGCTGCGGGATACCCGATTTATGGAGTAGCGCCCATGGTTGGTCAGGGAGAGCTGCAGAACCTTATGCAGACTAGGAACATGACTCCAGCACATCCACCAGTGAGCTCTGTCCAATATCCTTCATCTGGTTTTTATTCTTTGGGGCAAGTTGCTCCGGTTAATGGAATGATGACAGCCGGAGCGAATAAACCTCAGTCAGCAGCACCAGTGTCATCAACTACTTCACAGTCTGCAAAGGATTATGATTTTTCCTCCTTAACACAAGGGATGTTTGCGAAACAATGA 1425 0.44 MNQKANVSKELNAKHKKILEGLLKLPDNRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKANSYWEAELPPRYDRVGIENFIRAKYEEKRWVSRDGKPKSPSRLQEEKIQSHWQRPVERSSQGYAAGSEISFQERKKIQPSNAIPATRVSVPSPPKGPDQVIPITKPQHVQKVEPVAPQPPAETTNQATDTAQNIPPKVDYATDLFNMLSMDGPSENGSEAASTADDNNWAGFQSSAEASTAEKTSQLKPFESTPQSASGIEDLFKDSPSLTPSLAPGKPEKDVKNDIMSLFEKSNMVSPFAMHQQQLAMLAQQQSLIMAAATKSTAGNPIYTASTQHPSSNIPGQNWPAAGYPIYGVAPMVGQGELQNLMQTRNMTPAHPPVSSVQYPSSGFYSLGQVAPVNGMMTAGANKPQSAAPVSSTTSQSAKDYDFSSLTQGMFAKQ* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0201 474 MobiDBLite consensus disorder prediction 241 294 - -
Lan19g0201 474 CDD ArfGap 19 117 - -
Lan19g0201 474 MobiDBLite consensus disorder prediction 124 145 - -
Lan19g0201 474 PANTHER ARF GTPASE ACTIVATOR 1 474 - -
Lan19g0201 474 Gene3D Arf GTPase activating protein 1 130 IPR038508 -
Lan19g0201 474 SUPERFAMILY ArfGap/RecO-like zinc finger 15 124 IPR037278 -
Lan19g0201 474 Pfam Putative GTPase activating protein for Arf 17 125 IPR001164 GO:0005096
Lan19g0201 474 MobiDBLite consensus disorder prediction 124 227 - -
Lan19g0201 474 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 130 IPR001164 GO:0005096
Lan19g0201 474 MobiDBLite consensus disorder prediction 211 227 - -
Lan19g0201 474 MobiDBLite consensus disorder prediction 155 179 - -
Lan19g0201 474 MobiDBLite consensus disorder prediction 239 314 - -
Lan19g0201 474 SMART arf_gap_3 16 130 IPR001164 GO:0005096
Lan19g0201 474 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 474 IPR044520 GO:0005096
Lan19g0201 474 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Lan19g0201 474 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Lan19g0201 474 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0201 Lan-Chr19 1970531 1978777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0201 16 123 C2H2 Transcription Factor Family AT4G05330 50.000 1.61e-30 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0201 K12486 - gmx:100789910 714.146