Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0196 ATGAACTGCTCCATTTCCGGCGAGGTGCCGGAAGAGCCTGTGGTGTCGAAATCTGGTATTCTCTTCGAGAAGCGTTTGATTGAGAGACACATATTGGATTATGCTAAATGTCCAATTACTGGAGAACCACTTACTTTGGATGACATTGTACCTATCAAAACAGGCAAGATAGTGAAGCCCAGACCTCTGCAGGCAGCTAGCATCCCTGGCATGCTTGGAATGTTCCAGAATGAATGGGATGGATTGATGCTATCTAATTTTGCGTTGGAGCAACAATTACACACAGCAAGGCAAGAGCTAAGTCATGCTCTATATCAGCATGATGCTGCTTGCCGTGTGATTGCAAGGCTTAAAAAGGAGCGAGATGATGCTAGGTCATTACTTACACAGGCAGAAAGGCAATTCCCTATTTCTTCACCAAATGCCACACCAGCAGATGTCTCTGTCCTGAGCAATGGGAAAAGAGCTGCTGAGGATGAGCTGGCACCTGGTGCGAAGAAAATACATCCTGGAATAACTACCAGCATAATTTCTGAGCTAACTGACTGTAATGCTGCTCTCTCACAGCAGAGGAAAAAGCGCCAGATTCCTGCAACTTTGGCTTCTGTTGATGATATAGAGAGATATACCCAGACATCTAGTCACCCCATTCACAAAACAAACAAACCAGGCATTGTATCTCTTGACATTCTTTATCCTAAGGATATAATTGCAACTGGTGGTATTGATACAAATGCTGTTATTTTTGACCGACCCTCAGGACAGATATTATCTACACTCAGTGGCCACTCGAAAAAGGTAACCAGTGTAAAGTTTGTAGGTCAGGGTGATTCAATCTTAACTGGCTCAGCAGATAAGACAGTTCGGTTGTGGCAAAGCTCAGATGATGGTAAATATAACTGCAGACACGTATTGCGGGATCATACAGCTGAGGTGGAAGCTGTCACTGTCCATGCCACCAATAATTATTTTGTGACTGCTTCACTGGATGGAACTTGGTGCTTCTATGATCTGCCTTCAGGGACTTGTCTGACTCAGGTTTCGGAGTCTTTGGGTTCTTCAGAAGGCTATACATCTGCGTCGTTTCACCCGGATGGTCTCATTCTTGGTACCGGTACTACAGAAGGCCTTGTTAAGATCTGGGATGTGAAAAGTCAGGCAAATGTTGCTAGGTTTGATGGACATGTAGGCCCAGTAACTGCCATATCCTTTTCTGAGAACGGTTACTTCCTTGCGACTGCAGCTCATGATGGTGTAAGGCTTTGGGATCTACGTAAATTGAAAAATTTCAGGAATTTTGCTCCATATGACTCAGAAACTCCAACAAACTATGTGGAGTTCGACCATAGTGGATCCTACCTTGCAGTTGCAGGCTCTGATACAAGAATTTACCAAGTTGCAAGTGTAAAACATGAATGGAACTGTATCAAAACATTTCCTGATTTATCCGGAACAGGGAAAGCTACCTGTGTAAAATTTGGTCAGGATTCAAAATATATAGCAGTGGGATCAATGGACCGGAATCTTCGAATATTCGGCTTGCCTATAGAAGATGGTTCCGCTGAGTCATGA 1572 0.4383 MNCSISGEVPEEPVVSKSGILFEKRLIERHILDYAKCPITGEPLTLDDIVPIKTGKIVKPRPLQAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDDARSLLTQAERQFPISSPNATPADVSVLSNGKRAAEDELAPGAKKIHPGITTSIISELTDCNAALSQQRKKRQIPATLASVDDIERYTQTSSHPIHKTNKPGIVSLDILYPKDIIATGGIDTNAVIFDRPSGQILSTLSGHSKKVTSVKFVGQGDSILTGSADKTVRLWQSSDDGKYNCRHVLRDHTAEVEAVTVHATNNYFVTASLDGTWCFYDLPSGTCLTQVSESLGSSEGYTSASFHPDGLILGTGTTEGLVKIWDVKSQANVARFDGHVGPVTAISFSENGYFLATAAHDGVRLWDLRKLKNFRNFAPYDSETPTNYVEFDHSGSYLAVAGSDTRIYQVASVKHEWNCIKTFPDLSGTGKATCVKFGQDSKYIAVGSMDRNLRIFGLPIEDGSAES* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0196 523 Pfam Prp19/Pso4-like 65 129 IPR013915 -
Lan19g0196 523 Pfam U-box domain 3 52 IPR003613 GO:0004842|GO:0016567
Lan19g0196 523 Pfam WD domain, G-beta repeat 300 337 IPR001680 GO:0005515
Lan19g0196 523 Pfam WD domain, G-beta repeat 254 291 IPR001680 GO:0005515
Lan19g0196 523 Pfam WD domain, G-beta repeat 473 512 IPR001680 GO:0005515
Lan19g0196 523 Pfam WD domain, G-beta repeat 388 423 IPR001680 GO:0005515
Lan19g0196 523 CDD WD40 224 512 - -
Lan19g0196 523 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 260 292 - -
Lan19g0196 523 ProSiteProfiles Trp-Asp (WD) repeats profile. 260 292 IPR001680 GO:0005515
Lan19g0196 523 Coils Coil 114 134 - -
Lan19g0196 523 SMART WD40_4 472 513 IPR001680 GO:0005515
Lan19g0196 523 SMART WD40_4 385 423 IPR001680 GO:0005515
Lan19g0196 523 SMART WD40_4 298 337 IPR001680 GO:0005515
Lan19g0196 523 SMART WD40_4 340 382 IPR001680 GO:0005515
Lan19g0196 523 SMART WD40_4 210 250 IPR001680 GO:0005515
Lan19g0196 523 SMART WD40_4 253 292 IPR001680 GO:0005515
Lan19g0196 523 SMART WD40_4 426 465 IPR001680 GO:0005515
Lan19g0196 523 SMART Ubox_2 1 65 IPR003613 GO:0004842|GO:0016567
Lan19g0196 523 ProSiteProfiles Trp-Asp (WD) repeats profile. 350 391 IPR001680 GO:0005515
Lan19g0196 523 SUPERFAMILY WD40 repeat-like 217 512 IPR036322 GO:0005515
Lan19g0196 523 CDD RING-Ubox_PRP19 3 53 - -
Lan19g0196 523 ProSiteProfiles Trp-Asp (WD) repeats profile. 392 432 IPR001680 GO:0005515
Lan19g0196 523 Gene3D - 198 514 IPR015943 GO:0005515
Lan19g0196 523 ProSiteProfiles U-box domain profile. 1 69 IPR003613 GO:0004842|GO:0016567
Lan19g0196 523 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 392 425 - -
Lan19g0196 523 ProSiteProfiles Trp-Asp (WD) repeats profile. 305 346 IPR001680 GO:0005515
Lan19g0196 523 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 59 IPR013083 -
Lan19g0196 523 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 350 385 - -
Lan19g0196 523 SUPERFAMILY RING/U-box 2 54 - -
Lan19g0196 523 PANTHER PRE-MRNA-PROCESSING FACTOR 19 1 523 IPR038959 GO:0000398|GO:0000974|GO:0006281|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0196 Lan-Chr19 1712971 1724878 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0196 1 523 U-box Gene Family AT1G04510 73.524 0.0 800
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0196 K10599 - gmx:100527039 926.776