Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0192 ATGGAGAGCACTGATTCATCCACCGGTTCACAACAACAACCAAACCTGCCACCAGGGTTCCGGTTCCACCCAACAGACGAAGAACTCGTGGTTCATTACCTGAAGAAAAAAACTGCCTCAGCTCCTCTTCCAGTTCACATCATCGCCGAGGTTGATCTCTATAAGTTTGATCCATGGGAGCTACCAGCAAAAGCAGTGTTTGGGGATCAGGAATGGTATTTCTTTAGTCCTAGGGATAGGAAATACCCAAATGGTGCAAGGCCAAACAGGGCTGCAACTTCTGGGTATTGGAAAGCTACAGGAACAGATAAGCCTGTGTTAACATGTGGTGGAACACAGAAAGTTGGTGTGAAGAAAGCATTGGTTTTTTATGGAGGGAAGCCACCAAAAGGGATCAAAACCAATTGGATCATGCATGAGTATAGGATTGCTGATAACAAGGCTAATAATAGGCCTCCTGGTTGTGACTTGGGCAACAAGAAAAACTCTCTAAGACTTGATGATTGGGTGCTATGCCGAATCTATAAGAAGAACACTACACATAGGTCCCCTTTGGAACATGACAGAGAAGATTCAATGGATGATATGATTAAAGGAATACCTCTTTCAATCAACTTGGGTCAAATGAATGGTAGGTTTCATCTTTCAAAGATGTCTACAAACTACAATAATGCATTGTTGGAAAATGACCAGAACTTATTAGAAGGAATGGTATTAAACAATGGTTTAGGTTCCTTAACCTCCAAGACAGAGCTTCCTTTTGTGCCAAACATTGCGAATTCGGGGTCGAAAAGAACACTATCTTCTCTGTATTGGAATGGTGATCAAGATATGGATGTGGCAGGAACATCATCAACAAACAAAAGGTTCAGTTTGGAGAGTGGTGAACATGATGGAAGTGTTGTGAGAACTGAAGAGAATAATAATAATAATAATAATGGCACTTCTAGCTCTTTTGCAACTCTGCTTAATAAATTCCCTCAAACCCCTTCATTGCACCAACAACAAACATTACTTGGATCATTAGGTGAAGGGTTACTTAGAACAACATCATATCAAATAGCAGGAATGAATTGGTATGCTTAG 1086 0.4079 MESTDSSTGSQQQPNLPPGFRFHPTDEELVVHYLKKKTASAPLPVHIIAEVDLYKFDPWELPAKAVFGDQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVLTCGGTQKVGVKKALVFYGGKPPKGIKTNWIMHEYRIADNKANNRPPGCDLGNKKNSLRLDDWVLCRIYKKNTTHRSPLEHDREDSMDDMIKGIPLSINLGQMNGRFHLSKMSTNYNNALLENDQNLLEGMVLNNGLGSLTSKTELPFVPNIANSGSKRTLSSLYWNGDQDMDVAGTSSTNKRFSLESGEHDGSVVRTEENNNNNNNGTSSSFATLLNKFPQTPSLHQQQTLLGSLGEGLLRTTSYQIAGMNWYA* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0192 361 ProSiteProfiles NAC domain profile. 16 177 IPR003441 GO:0003677|GO:0006355
Lan19g0192 361 MobiDBLite consensus disorder prediction 1 21 - -
Lan19g0192 361 Pfam No apical meristem (NAM) protein 17 143 IPR003441 GO:0003677|GO:0006355
Lan19g0192 361 PANTHER NAC TRANSCRIPTION FACTOR 56 1 334 - -
Lan19g0192 361 SUPERFAMILY NAC domain 10 177 IPR036093 GO:0003677|GO:0006355
Lan19g0192 361 MobiDBLite consensus disorder prediction 285 321 - -
Lan19g0192 361 MobiDBLite consensus disorder prediction 304 321 - -
Lan19g0192 361 Gene3D NAC domain 25 182 IPR036093 GO:0003677|GO:0006355
Lan19g0192 361 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 334 - -
Lan19g0192 361 MobiDBLite consensus disorder prediction 1 18 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0192 Lan-Chr19 1668080 1670749 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0192 1 361 NAC Transcription Factor Family AT3G15510 52.972 6.43e-120 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lan19g0192 NAM 4.2e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0192 - - vra:106763825 573.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan19g0192 19 1668080 1670749 Lan5g0944 5 22594002 22596626 LSH