Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0187 ATGACCAAAACGACATTACTCGACCAAGAAAACGACGATTTCTTCTACGAATCTCAAGACATTTTTCTCTCTTCTTGTTCCACTTCCAATTCCGATAACGAAGACGAAACCATTCATAATTACAATTATGCCCCTCTCACTCTCAACAATTACGATATTTGGACTTCTCAACCTTCTTCTATCTCCGAACGCCGTAACCGTCTCCTCCGCCACTTAGGCCTCGCCGGCGACACCTCTTTCTCTCGCGGCCATGCCATCCACGGTGGCACCAATAGCAGCAATGCTGATATTTCGAGATCAGTTTCATCCGTTCAACTCTCCCGCTGTCAGAAACCACCGCCGGTGACAGAAGTCAGTGCTACCGCCACCTCTTCCTCCGCTGCTGTCATGTTGCGATCGAAATCCGATAGCGCTGCGGATCGCGGGAATTGTAATAATAAGCCGAGTTATTGTTCCTCCGGTTCGATTCATTCTGTAGATAACTGCGGCGTTGACAGCGGTAGTGGTTCACCGAGTAAGCCTCCTTCGGGGAGGAATTGCAGGAAGGTGGATCAAATTGGAAGCGAATTGAGGGATTTGAGTTTGGATTCGGGCAATGGTTTAGAGAATGGGGATGTGGATGAGAAGAAGGTGGAGGAGATAGAAGTGTGCACTATAAGAGATCTTGATAATGGGAAAGAGTTTGTGTTGAAGGAGGTGAGAGAAGATGGGAGGAACAAGGTTAAGGAGGTAGGAACAGGGAGACAGTTGACAATGGAGGAGTTTGAGATGACGGTTGGTCATTCGCCGATCGTTAAAGAATTGATGCGGCGCCAGAACGTGGAGGAAGGGAAAGACGGTGGTTATAACAAGGACAATGTGGATTCAATTGCAAATGGAGGAGGAAGTGGTGGTGATTCTTTTAAATCGAAGAAGAAAGGGAGTTGGTTGAGGAGCTTAAAGAGCATAAGGAGCTTAAGGAGTGTCGCGAGCTCCATGAAAGGGCATACTAGGGAGAGGAGAAGCAGCGATGAGAGGGATACTTCGTCGGAGAAGGGTGGGAGAAGGTCAAGTTCTGCAACCGATGATAGCCAGGATGCTGCTTCGTTTCATGGATTGGAGAGAGTGAGGGTTAAGCAGTATGGGAAGTCGTGTAAAGATCTTACTGCGGTTTATAAGACGCAGGAGATTCAGGCTCATAATGGATCTATATGGAGTATTAAGTTTAGTTTGGATGGCAAGTATCTCGCAAGTGCGGGTGAGGATTGTGTGATTCATGTTTGGCATGTTGTGGAATCTGCGAGGAAGCTTGAGTCGCTCATGGACAAACCCGAAGATGCGAATGTAAATATCTTGTTTGTTGTCAATGGCTCGCCTGATACAACAACCTTGTTGTCTCCTATGAAGGACAACAATCCAGAGAAAAAGAGAAAGGGAAGATCACCCATTAACAGAAAATCATTGAGCTCGGATCAATTAGTGGTGTCAGACGCTGTTTTTGCTCTCACAGAAAAACCCATTTGCTCCTTTCAAGGCCATCTCGCTGACGTGCTTGACCTCTCCTGGTCCAAATCTCAGCACTTGCTCTCATCTTCGATGGACAAAACAGTGCGGCTGTGGCATATGTCTAGCGAGTCTTGTTTGAAAATATTTTCACACAGTGACTATGTAACTTGCATCCAGTTTAATCCGGTTGATGATAGATACTTCATTAGTGGATCTTTGGATGCTAAGGTTCGCATATGGAGCATTCCTGATCGACAAGTTATTGATTGGATTGATCTGCATGAGATGGTCACTGCTGCTTGTTATACACCTGATGGTCAGGGCGCACTAGTTGGTTCGTACAAGGGTAGCTGCCATTTATATAATGCATCTGAAAATAAGTTGGAACAGAAAAGTCAGATCAATCTGCAGAATAAGAAAAAGAAATCGCATCAGAAGAAAATTACTGGTTTCCAGTTTGCACCGGGAAGTTCATCAGAAGTACTTATCACATCTGCTGATTCACGAATTCGGGTTGTTGATGGTGTTGATCTTGTTCACAAGTTTAAAGGGTTTCGTAATGCAACTAGCCCAATTTCAGCGTCCCTCACAGCAAACGGTAAATATATTGTCTCAGCCAGTGAGGATTCCCATGTATACATCTGGAAAAACGAAGCCGATTGTCGGCCTAACAGAAGCAAAGGTGTGACTATCACACATTCATATGAACACTTTCACTGTAAAGATGTGTCAGTGGCCATTCCTTGGCCTGGTACGGGTGATGTATGGGACATGCATGCTACACTTCCTGGAGAGCAAACTGAGCTCGATCACAATGCTGATGAGACCTCTTCAGAAAATAATCCTCCTACCCCTGTAGAGGAAAACATTGATACCGAGGGTTCACGATCTGCATCAGGTTACAACAGTCCGCACCATGGAACTGTTGCAAGTGCGACAAACAGTTACTTTTTTGATAGAATTTCCGCAACATGGCCAGAAGAAAAACTTCTTGCTGAGAGGAATCGAAGCAGCCCTGGTGTGAGTGTGGACTTCTCAAACGGGGCAAGTCAAAACATGTCAGCCTTGGGTATGGTGATCGTAACTGCTGGCCTTCGAGGTGAAATTACAACTTTCCAAAATTTTGGATTGCCACTTCGAATATAA 2631 0.4538 MTKTTLLDQENDDFFYESQDIFLSSCSTSNSDNEDETIHNYNYAPLTLNNYDIWTSQPSSISERRNRLLRHLGLAGDTSFSRGHAIHGGTNSSNADISRSVSSVQLSRCQKPPPVTEVSATATSSSAAVMLRSKSDSAADRGNCNNKPSYCSSGSIHSVDNCGVDSGSGSPSKPPSGRNCRKVDQIGSELRDLSLDSGNGLENGDVDEKKVEEIEVCTIRDLDNGKEFVLKEVREDGRNKVKEVGTGRQLTMEEFEMTVGHSPIVKELMRRQNVEEGKDGGYNKDNVDSIANGGGSGGDSFKSKKKGSWLRSLKSIRSLRSVASSMKGHTRERRSSDERDTSSEKGGRRSSSATDDSQDAASFHGLERVRVKQYGKSCKDLTAVYKTQEIQAHNGSIWSIKFSLDGKYLASAGEDCVIHVWHVVESARKLESLMDKPEDANVNILFVVNGSPDTTTLLSPMKDNNPEKKRKGRSPINRKSLSSDQLVVSDAVFALTEKPICSFQGHLADVLDLSWSKSQHLLSSSMDKTVRLWHMSSESCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPDRQVIDWIDLHEMVTAACYTPDGQGALVGSYKGSCHLYNASENKLEQKSQINLQNKKKKSHQKKITGFQFAPGSSSEVLITSADSRIRVVDGVDLVHKFKGFRNATSPISASLTANGKYIVSASEDSHVYIWKNEADCRPNRSKGVTITHSYEHFHCKDVSVAIPWPGTGDVWDMHATLPGEQTELDHNADETSSENNPPTPVEENIDTEGSRSASGYNSPHHGTVASATNSYFFDRISATWPEEKLLAERNRSSPGVSVDFSNGASQNMSALGMVIVTAGLRGEITTFQNFGLPLRI* 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0187 876 MobiDBLite consensus disorder prediction 456 478 - -
Lan19g0187 876 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 503 537 - -
Lan19g0187 876 MobiDBLite consensus disorder prediction 321 364 - -
Lan19g0187 876 MobiDBLite consensus disorder prediction 80 143 - -
Lan19g0187 876 MobiDBLite consensus disorder prediction 771 801 - -
Lan19g0187 876 ProSiteProfiles Trp-Asp (WD) repeats profile. 503 543 IPR001680 GO:0005515
Lan19g0187 876 MobiDBLite consensus disorder prediction 765 801 - -
Lan19g0187 876 Gene3D - 326 467 IPR015943 GO:0005515
Lan19g0187 876 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 543 577 - -
Lan19g0187 876 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN-RELATED 10 876 - -
Lan19g0187 876 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 390 423 - -
Lan19g0187 876 MobiDBLite consensus disorder prediction 326 352 - -
Lan19g0187 876 PRINTS G protein beta WD-40 repeat signature 409 423 IPR020472 -
Lan19g0187 876 PRINTS G protein beta WD-40 repeat signature 521 535 IPR020472 -
Lan19g0187 876 PRINTS G protein beta WD-40 repeat signature 563 577 IPR020472 -
Lan19g0187 876 SUPERFAMILY WD40 repeat-like 385 712 IPR036322 GO:0005515
Lan19g0187 876 PANTHER WD REPEAT DOMAIN 44 10 876 IPR040324 -
Lan19g0187 876 MobiDBLite consensus disorder prediction 276 305 - -
Lan19g0187 876 Gene3D - 477 735 IPR015943 GO:0005515
Lan19g0187 876 ProSiteProfiles Trp-Asp (WD) repeats profile. 390 423 IPR001680 GO:0005515
Lan19g0187 876 MobiDBLite consensus disorder prediction 84 143 - -
Lan19g0187 876 SMART WD40_4 670 711 IPR001680 GO:0005515
Lan19g0187 876 SMART WD40_4 537 576 IPR001680 GO:0005515
Lan19g0187 876 SMART WD40_4 383 422 IPR001680 GO:0005515
Lan19g0187 876 SMART WD40_4 579 617 IPR001680 GO:0005515
Lan19g0187 876 SMART WD40_4 624 669 IPR001680 GO:0005515
Lan19g0187 876 SMART WD40_4 496 534 IPR001680 GO:0005515
Lan19g0187 876 MobiDBLite consensus disorder prediction 162 181 - -
Lan19g0187 876 ProSiteProfiles Trp-Asp (WD) repeats profile. 543 577 IPR001680 GO:0005515
Lan19g0187 876 Pfam WD domain, G-beta repeat 388 421 IPR001680 GO:0005515
Lan19g0187 876 Pfam WD domain, G-beta repeat 539 576 IPR001680 GO:0005515
Lan19g0187 876 Pfam WD domain, G-beta repeat 498 533 IPR001680 GO:0005515
Lan19g0187 876 Pfam WD domain, G-beta repeat 674 711 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0187 Lan-Chr19 1602977 1608365 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0187 490 708 U-box Gene Family AT2G33340 25.210 9.22e-07 50.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan19g0187 19 1602977 1608365 Lan5g0937 5 22477290 22483381 LSH