Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0171 ATGGAGGGTTCTTCTGGTTCTGCTTGGCAGAAATCTGGAAGTTCTAGGGGATTAAATGGTTCCGGAGTCTCGGACAGGAACCAAAGGCTTCATTCTCCTGAAAGGAACCCCTTCTCCGGTGATGCATCACAGGATTCTGGCTTTAAAGCGGAAAGGGATATGGCTCTATTGGCACATGGTGATCATCAGCCTAAAAATCTGGGTAGGTTTTCTGGTTTTTGTGAGGATGAAGTCGGGGTTGACCCTTTTGTTTGTTCTATAGAATGGGGTGATGTTAGCTTGAGGCAATGGGTAGATAAACCCGAACGAGCGGTTGATGTTTTCGAGTGCTTGCACATATTTAGGCAAATAGTAGAAATTGTTAATGCAGCACATTCTCAAGGAGTTGTAGTTCATAATGTGAGGCCTTCCTGCTTTGTCATGTCATCTTTCAACCATATCTCATTTATTGAATCAGCATCTTGTTCAGATTCAAGCTCAGATTCTTTAGGAGATGAACGGAACGACCAAGGTGTTGAGATTAAAAAATTAATGTCTACGTATCAGCAGAGTGTAGGAAGTGAAGATTTTGTGCCTGGCAAGACTTCAGCAACTGGTTTATCACATTCTAGTTGCATGCTGTCAAGTGCTGTGTATGCTGCCCGAGCATCGTTAATAGAAGAAACAGAAGAAAATAAAATAAAAGATAGCCGAAAGGCTGAAGAAGTGGAAGGAAAGAAACAATCATTTCCAATGAAACAGATACTGCAAATGGAAATGAGTTGGTACTCTAGTCCCGAAGAGCTTGCTGGCACCCCTAGTTCATGTGCTTCAGACGTTTACCGATTGGGGGTTCTCCTTTTTGAGCTATTCTGTCCACTCAGCTCAAGGGAAGAAAAGAGTAGAACTATGTCTAGCCTTAGACATAGAGTTCTTCCTCCACAGTTGCTTCTAAAGTGGCCTAAGGAAGCTTCATTTTGCTTATGGTTACTGCACCCTGACCCTAGTAGTCGTCCAACGTTGGGGGAATTGTTGCAGAGTGAGTTTCTCAATGAACAGAGAGATGATATGGAAGAACGTGAAGCAGCAATAGAGCTTAGACAAAGGATAGAGGATCAGGAGTTGTTGCTAGAATTTCTTTTGTTACTTCAGCAAAAAAAACGGGAAGTTGCTGAGAAGCTGCAACATACTATCTCTTTTCTGTGTTCAGATATTGAAGAAGTGGCCAAGCAGCAAACTAGATTTAAAGAGATTGCTGGTGCTGAACTAGGGAACGATGATCGTTCTGCATCAAGTTTTCCAATCATGACAGTTATTGATAGTGATGATTCTGCCTGTCCGGGGACCAGAAAACGAGTCAGACCAGGGATGCATGCTAAAAACATTGAGGAATGTGATGATAGATTAGGTGATGATCAGAATAATCACGAAAGCTTTCTTTCAAAAAACTCACGGCTAATGAAGAACTTCAAGAAGCTAGAGTCAGCTTACTTTTTAACACGATGCAGACCTGCCAATTCATCAGGGAAACCGGTGGTTAGACATTCACCGATAACAAATGATGGTAGAGGGTCTGTTGTCATGAGTGAAAGTTGTGTCAATAACTTAGCATCCAGAGAGCAGTGCCGGGATGGAAAAGCTTGGATAAATCCTTTCCTCGAGGGTTTGTGCAAGTACTTATCTTTCAGTAAGCTAAAGGTTAAGGCTGACCTGAAGCAAGGCGATCTTTTGCATTCATCCAACCTAGTATGTGCACTCAGTTTTGATCGTGATGGAGATTTTTTTGCTACTGCTGGCGTAAATAAGAAAATTAAAGTTTTTGAATGTGATACAATCATAAATGAGGATCGTGATATCCATTATCCAGTTGTGGAGATGGCTAGCAGGTCAAAGTTGAGCAGTATATGTTGGAATACTTACATCAAAAGTCAAATTGCTTCAAGTAACTTCGAAGGTGTTGTACAGTTATGGGATATTACAAGAAGTCAAATACTGTCAGAAATGAAGGAGCATGAACGGCGAGTGTGGTCCATTGATTTCTCATCGGCAGACCCAACAATGTTGGCAAGCGGAAGCGATGACGGTTCTGTTAAGCTATGGAGTATCAATCAGGGAGTAAGCATCGGTACCATCAAAACGAAGGCAAATATATGCTGTGTTCAGTTCCCTCCGGACTCTGCTACTTCTCTCGCATTTGGTTCTGCGGATCACCGAATATATTACTATGATCTTCGCAGCCTAAAAGCGCCACTTTGCACATTAGTTGGACATAATAAGACTGTGAGCTACATCAAGTTTGTAGATAGTATGAACCTTGTTTCCGCTTCCACAGATAACACTTTGAAGCTTTGGGATTTATCCAAGTGTGCATCTCGCGTTATAAACACACCGATTCAATCATTCACAGGTCACATGAATGTCAAGAACTTCGTAGGGTTGTCAGTATCCGATGGTTATATCGCTACTGGTTCAGAGACAAATGAGGTGTTCATATACCACAAGGCCTTTCCCATGCCAGCATTGTCATTCAAGTTTCAGAACACAGACCCACTTTCGGGTCATGAAGTTGATGATGCTGCACAATTCGTCTCTTCTGTTTGCTGGCGCGGTCAATCTTCGACTTTAGTCGCTGCAAATTCCACAGGAAATGTCAAAATTCTGGAGATGGTTTGA 2652 0.4216 MEGSSGSAWQKSGSSRGLNGSGVSDRNQRLHSPERNPFSGDASQDSGFKAERDMALLAHGDHQPKNLGRFSGFCEDEVGVDPFVCSIEWGDVSLRQWVDKPERAVDVFECLHIFRQIVEIVNAAHSQGVVVHNVRPSCFVMSSFNHISFIESASCSDSSSDSLGDERNDQGVEIKKLMSTYQQSVGSEDFVPGKTSATGLSHSSCMLSSAVYAARASLIEETEENKIKDSRKAEEVEGKKQSFPMKQILQMEMSWYSSPEELAGTPSSCASDVYRLGVLLFELFCPLSSREEKSRTMSSLRHRVLPPQLLLKWPKEASFCLWLLHPDPSSRPTLGELLQSEFLNEQRDDMEEREAAIELRQRIEDQELLLEFLLLLQQKKREVAEKLQHTISFLCSDIEEVAKQQTRFKEIAGAELGNDDRSASSFPIMTVIDSDDSACPGTRKRVRPGMHAKNIEECDDRLGDDQNNHESFLSKNSRLMKNFKKLESAYFLTRCRPANSSGKPVVRHSPITNDGRGSVVMSESCVNNLASREQCRDGKAWINPFLEGLCKYLSFSKLKVKADLKQGDLLHSSNLVCALSFDRDGDFFATAGVNKKIKVFECDTIINEDRDIHYPVVEMASRSKLSSICWNTYIKSQIASSNFEGVVQLWDITRSQILSEMKEHERRVWSIDFSSADPTMLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPPDSATSLAFGSADHRIYYYDLRSLKAPLCTLVGHNKTVSYIKFVDSMNLVSASTDNTLKLWDLSKCASRVINTPIQSFTGHMNVKNFVGLSVSDGYIATGSETNEVFIYHKAFPMPALSFKFQNTDPLSGHEVDDAAQFVSSVCWRGQSSTLVAANSTGNVKILEMV* 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0171 883 SMART serkin_6 2 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan19g0171 883 PANTHER PROTEIN SPA1-RELATED 3 1 883 - -
Lan19g0171 883 PRINTS G protein beta WD-40 repeat signature 638 652 IPR020472 -
Lan19g0171 883 PRINTS G protein beta WD-40 repeat signature 681 695 IPR020472 -
Lan19g0171 883 PRINTS G protein beta WD-40 repeat signature 765 779 IPR020472 -
Lan19g0171 883 PANTHER PROTEIN SPA1-RELATED 2 1 883 IPR044630 GO:0009640
Lan19g0171 883 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 661 698 - -
Lan19g0171 883 SUPERFAMILY Protein kinase-like (PK-like) 51 355 IPR011009 -
Lan19g0171 883 MobiDBLite consensus disorder prediction 1 43 - -
Lan19g0171 883 Coils Coil 219 239 - -
Lan19g0171 883 Gene3D Transferase(Phosphotransferase) domain 1 91 355 - -
Lan19g0171 883 ProSiteProfiles Trp-Asp (WD) repeats profile. 661 703 IPR001680 GO:0005515
Lan19g0171 883 ProSiteProfiles Protein kinase domain profile. 1 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan19g0171 883 MobiDBLite consensus disorder prediction 1 46 - -
Lan19g0171 883 CDD WD40 576 879 - -
Lan19g0171 883 ProSitePatterns Trp-Asp (WD) repeats signature. 765 779 IPR019775 -
Lan19g0171 883 Gene3D - 547 883 IPR015943 GO:0005515
Lan19g0171 883 ProSiteProfiles Trp-Asp (WD) repeats profile. 747 780 IPR001680 GO:0005515
Lan19g0171 883 SMART WD40_4 566 601 IPR001680 GO:0005515
Lan19g0171 883 SMART WD40_4 612 651 IPR001680 GO:0005515
Lan19g0171 883 SMART WD40_4 654 694 IPR001680 GO:0005515
Lan19g0171 883 SMART WD40_4 740 778 IPR001680 GO:0005515
Lan19g0171 883 SMART WD40_4 837 881 IPR001680 GO:0005515
Lan19g0171 883 SMART WD40_4 697 736 IPR001680 GO:0005515
Lan19g0171 883 SMART WD40_4 787 826 IPR001680 GO:0005515
Lan19g0171 883 Coils Coil 340 360 - -
Lan19g0171 883 Pfam Protein tyrosine and serine/threonine kinase 213 338 IPR001245 GO:0004672|GO:0006468
Lan19g0171 883 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 747 780 - -
Lan19g0171 883 SUPERFAMILY WD40 repeat-like 571 880 IPR036322 GO:0005515
Lan19g0171 883 Pfam WD domain, G-beta repeat 743 778 IPR001680 GO:0005515
Lan19g0171 883 Pfam WD domain, G-beta repeat 571 600 IPR001680 GO:0005515
Lan19g0171 883 Pfam WD domain, G-beta repeat 657 694 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0171 Lan-Chr19 1510628 1515892 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0171 651 825 Miscellaneous Gene Families AT5G08390 26.404 6.67e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_PEK Lan19g0171 PK_Tyr_Ser-Thr 5.3e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0171 - - gmx:100811457 1478