Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0160 ATGGACAGTTACTACAACCACAATCACTTTGATAACAATAGTGATTCTCTCTTACCACCTGGATTTCGTTTTCACCCCACAGATGAAGAGCTTATCACCTATTACCTTGTCAAGAAGGTTCTAAACAATACCTTCAATGGAAGAGCCATAGCTGATGTTGACCTTAACAAGTGTGAGCCATGGGAGCTCCCTGAGAAAGCTAAGATGGGTGAAAAGGAGTGGTATTTTTTCAGCCTACGAGATAGAAAGTACCCAACTGGTTTACGTACAAATAGGGCTACAAAAGCTGGATATTGGAAAGCCACTGGTAAAGATAGAGAGATTTATAGTTCTAAAACTCATTGCCTTGTTGGAATGAAGAAAACATTAGTTTTCTATGGAGGTAGAGCTCCCAAAGGTGAGAAAAGTAACTGGATCATGCATGAGTATAGACTTTATGGCAAACTTGCTTATCATTATCTCTCTCACACCTCCAAGGACGAGTGGGTCATATCTCGTGTGTTTCAGAAGAGCACCACCGGTAGTGGTGGCTCCACCGTGTCTGCCACCACAAGCAACTCTTCCAAGAAGACAACACCAATCACCGCCACCACCACCACCACCTCATCTGTTAACATGAGCCTCTGTCTTGAACAACGAAGTTCTCCCTCTTCAGTTTACCTTCCACCTTTTCTACCCTCTTCTCCCTACACCACCACCACCGCTACCAGCACCGCCACCTTCAACAACACCATAGCAGAGCACGTGTCCTGTTTCTCCAACAACAACTTCAGCAATGAGAGCTTTGGCTTTGCTCCTCTGACTCTAGACCCTTTTACTCGGTTCCAAAGAAACTTTCAGCCACCTTTCTTTTTCTCCCCGGCCATGCAGCCCGTTAATGGCGGTAGTTTTATCGCGCCGGTGGAGCAAAAGGTGGCTGATGGTGGTTCCAACATAGCATTAGGACCATCAGAGTTTGATTGCATGTGGGGCTATTGA 978 0.456 MDSYYNHNHFDNNSDSLLPPGFRFHPTDEELITYYLVKKVLNNTFNGRAIADVDLNKCEPWELPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATKAGYWKATGKDREIYSSKTHCLVGMKKTLVFYGGRAPKGEKSNWIMHEYRLYGKLAYHYLSHTSKDEWVISRVFQKSTTGSGGSTVSATTSNSSKKTTPITATTTTTSSVNMSLCLEQRSSPSSVYLPPFLPSSPYTTTTATSTATFNNTIAEHVSCFSNNNFSNESFGFAPLTLDPFTRFQRNFQPPFFFSPAMQPVNGGSFIAPVEQKVADGGSNIALGPSEFDCMWGY* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0160 325 SUPERFAMILY NAC domain 16 170 IPR036093 GO:0003677|GO:0006355
Lan19g0160 325 MobiDBLite consensus disorder prediction 171 195 - -
Lan19g0160 325 ProSiteProfiles NAC domain profile. 18 170 IPR003441 GO:0003677|GO:0006355
Lan19g0160 325 Gene3D NAC domain 27 174 IPR036093 GO:0003677|GO:0006355
Lan19g0160 325 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 12 254 - -
Lan19g0160 325 Pfam No apical meristem (NAM) protein 19 145 IPR003441 GO:0003677|GO:0006355
Lan19g0160 325 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-LIKE 12 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0160 Lan-Chr19 1397684 1400700 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0160 9 325 NAC Transcription Factor Family AT5G53950 48.248 2.29e-103 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lan19g0160 NAM 2.2e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0160 - - cam:101501114 385.571