Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0159 ATGGCTCCGAGGGATAGGACCGCCGTGCTCTCCGTCGCCAACAACGCCGTCACCGCCGCCGCTAAAGAGATTAGGTATAGAGGCGTTAGGAAGCGTCCGTGGGGACGTTATGCTGCTGAGATCCGGGATCCCGGGAAGAAAACACGTGTATGGCTTGGAACTTTTGATACACCGGAAGAGGCGGCGCGTGCTTATGACGCTGCAGCACGCGAGTTCCGAGGCGCAAAAGCGAAGACAAATTTTGCAACCCCTTCAGAAGTAATGAACATAAGCATTAACAATAACACGCGCAGCCCTAGCCAAAGCAGCACTATTGACTCTTCTTCTCCACCGCCGCCGTTGGCACTCTCCCTCAGCCCATTCTCATCCTCCTCCACCGCCGGTTCATCCTACCCGGCGGCGCGTCCCGTGATGTTCTTCGACGTGTTCGCTCAACATGTCGGCCGCCGTGAGATGTGCGGGTTCGATCGTCCCGTGGCTGACTTCCGCCGCGCCTCTACCGTCACCGCCGTCGTTCAGAGCGACTCTGATTCTTCCTCAGTCGTGGATTTTGAACGTGTTCCTCGTCGGAAACTCTTAGATCTTGACCTTAACATTCCTCCTCCGCCTGAAGTTGTATGA 621 0.5636 MAPRDRTAVLSVANNAVTAAAKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTPEEAARAYDAAAREFRGAKAKTNFATPSEVMNISINNNTRSPSQSSTIDSSSPPPPLALSLSPFSSSSTAGSSYPAARPVMFFDVFAQHVGRREMCGFDRPVADFRRASTVTAVVQSDSDSSSVVDFERVPRRKLLDLDLNIPPPPEVV* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0159 206 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 11 196 - -
Lan19g0159 206 MobiDBLite consensus disorder prediction 91 121 - -
Lan19g0159 206 SUPERFAMILY DNA-binding domain 25 82 IPR016177 GO:0003677
Lan19g0159 206 SMART rav1_2 25 88 IPR001471 GO:0003700|GO:0006355
Lan19g0159 206 Gene3D AP2/ERF domain 24 83 IPR036955 GO:0003700|GO:0006355
Lan19g0159 206 PRINTS Ethylene responsive element binding protein signature 26 37 IPR001471 GO:0003700|GO:0006355
Lan19g0159 206 PRINTS Ethylene responsive element binding protein signature 48 64 IPR001471 GO:0003700|GO:0006355
Lan19g0159 206 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4 11 196 - -
Lan19g0159 206 CDD AP2 25 82 IPR001471 GO:0003700|GO:0006355
Lan19g0159 206 Pfam AP2 domain 25 74 IPR001471 GO:0003700|GO:0006355
Lan19g0159 206 ProSiteProfiles AP2/ERF domain profile. 25 82 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0159 Lan-Chr19 1388227 1389311 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0159 15 151 AP2-EREBP Transcription Factor Family AT3G15210 57.895 1.80e-47 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lan19g0159 AP2 6.3e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0159 K09286 - gmx:100500601 196.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan19g0159 19 1388227 1389311 Lan5g0914 5 22170929 22171968 LSH