Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0147 ATGGACATCACGGCGAAACTGAGATCTGGAACAGATATAGATTCCTACACAATCAAAGGCACTGAAAATATTATTAGAGCTGGGGATTGTGTGTTGATTCTTCATTCAGATTTGAGAAATCCACAAAATGTGGCGCGTGTGGAGAAGTTAAGGAAGGATAATAGTAGTAATGTAAATGTGCATGTGAGGTGGTATTATAGGCCAGAAGAAGCTGTTGGAGGAAGAAAGATTTTTCATGGAGCAAATGAGCTTTTTTTAACTGACCATTATGATGTTAAGAGTGCTGATGCCATTGAAGGGAAATGTGTTGTGCACCCCTTCAATGATTATATGAGAATTGAGAATCCAGGTGCAAAGGATTTCTATTGTAGGTTTGAGTACAAGGTTATTACTGGGTATTTTACTCCTGACAGTGTTCCAGTGTATTGCAAATGCGAGATGCCTTGTAACCCAGATATCTTCATGTTGCAGTGTGTGATGTGCCGGGATTGGTTCCATCATGGTTGTGTGGGCATGACCACTGAAGAAGCAAAGGCATCGAGCCAGTATCTATGTTCTGATTGTTTATCTAATTGCAAGGAGGAAGTTGGTGAGAATACTTTGAATAATTTCACATATGAAGAGCATAATGGTAATGCAAAAAAACCTACCCAAGTTCCAACAGAACTAGAAACTAGCACTCAGAACAGTGTCACTGATATTATTCAAAAACCAGTGATGGATAGTTCTACAAGGATGATGGATGTTCTTAACAATATAAATGGCTTGGAATGTGGTAGTACTTTGTGGTTGGACGCCATTTATTTGCTTGAGGATCCAGTAAGGAGGGCAATGTTCCTTGCAATGGAGAATGATGCTTGTAGATTGGCTTGGATCAAGTTTAGGTCTAATATTAAGGACAACTAA 906 0.3918 MDITAKLRSGTDIDSYTIKGTENIIRAGDCVLILHSDLRNPQNVARVEKLRKDNSSNVNVHVRWYYRPEEAVGGRKIFHGANELFLTDHYDVKSADAIEGKCVVHPFNDYMRIENPGAKDFYCRFEYKVITGYFTPDSVPVYCKCEMPCNPDIFMLQCVMCRDWFHHGCVGMTTEEAKASSQYLCSDCLSNCKEEVGENTLNNFTYEEHNGNAKKPTQVPTELETSTQNSVTDIIQKPVMDSSTRMMDVLNNINGLECGSTLWLDAIYLLEDPVRRAMFLAMENDACRLAWIKFRSNIKDN* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0147 301 ProSiteProfiles BAH domain profile. 23 138 IPR001025 GO:0003682
Lan19g0147 301 SMART PHD_3 142 189 IPR001965 -
Lan19g0147 301 PANTHER OS08G0421900 PROTEIN 11 205 - -
Lan19g0147 301 Gene3D Cupin 139 261 - -
Lan19g0147 301 ProSitePatterns Zinc finger PHD-type signature. 143 188 IPR019786 -
Lan19g0147 301 Gene3D - 4 138 IPR043151 -
Lan19g0147 301 PANTHER CHROMATIN REMODELING PROTEIN EBS 11 205 - -
Lan19g0147 301 SMART BAH_4 23 138 IPR001025 GO:0003682
Lan19g0147 301 SUPERFAMILY FYVE/PHD zinc finger 134 191 IPR011011 -
Lan19g0147 301 Pfam BAH domain 25 137 IPR001025 GO:0003682
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0147 Lan-Chr19 1299276 1301949 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0147 33 134 Core DNA Replication Machinery Family AT4G14700 33.981 3.91e-08 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lan19g0147 BAH 2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0147 K25868 - lang:109334108 635.18