Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0145 ATGGCGAAAACGAGATCAGGGAAAAAAGACATAGACTCATACACAATCAAAGGCACCAATGTGATCGTACGAGTTGGAGATAGTGTGTTGATGCATCCTCCTCAATCAAGCAAGCTACCGTATGTGGCACGTGTGGATAAGATTGAACATGACAATAGAAACAGTGTAAACGTGCGAATTCGCTGGTATTATAGGCCAGAAGATTCTCTTGGTGGAAGAAGAATATTTCATGGAACAAATGAGCTTTTTTTGTCTGACCATCATGATGTTCAAAGTGCTGACACAATTGAAGGGAAGTGTATTGTGCACCCCTTTGATGATTATATTAAGCTTGAGAAAGCTGGTTCCGATGACTACTTTTGTAGGTTTGAATACATGGCTACTGCTGGGACTTTCACTCCTGATAGTGTAGCTGTGTATTGCATATGTGAGTTGCCGTATAACCCAGATATCTTCATGATGCAATGTGAGAGGTGCCAGGACTGGTACCATCTTGCTTGTATAGGCATGACTGCTGAAGAAGCAGATAAATTGGAACACTATATATGTTCTGAATGTTCATCTGAGAATCATTTGAAAAAATCCAAGGCTGCATCTTCTGTACCAGCAATTCATGACAAGGAGAAACTCGATGCTAACACATTCCATAGTGATGGAATACCACCTGCCATAAAAGAGCCATGTGATAACCTAGTGGGAAATGAAGTTCCTAATGCAATAGAATGTGTTACTCCTATTGCGGCTCCTTTAGTTGTGAGCAATGTAGAGGCTGAGAATGTTGAAGTGGTCCATGTAGAGGCTGAGAATGTTGAAGTGGTCCCTGTAGATGCTGAGAATGTTGAAGTGGTCCATGTAGATGTTGGGGAAGAGGAAAAAACTAATGAAGAGAAAGATGATGAGCATAAGAGTAATGAAGATCAAGTTAAGTCAAAACCCATTGAAGAACCTATTCAAGGGCAAGGTGATGACCAAGTACCAACCAATGATATTAAGACTTCCATGGAACCACAGAAGAATGATACAAATGGGACTAATCCTGAGTCGATGGAACGTAAGAGGAAACAGCCAATGGAAGAAATGGGTGGTCCTACAAACCAAGCACCAAAGTTAAATGGTAACCCTCACACTAATATCAATTATATTGAAACACAAGTGGATAGTGTTGTAAAGGCAATCAATGTGCTTAACAATATTGCTGGCATGGAAGTTGGTGGTTCTTTGTGGTGCAATGCTCTTTATTTGCTTGAGGATCCGGTGAAAAGGACAATGTTCCTTCAAATGGGGGATGATGCTTGCAGGTTGGCTTGGATAAATTTTAGGTGTAAGATGGGCATGTAA 1338 0.4081 MAKTRSGKKDIDSYTIKGTNVIVRVGDSVLMHPPQSSKLPYVARVDKIEHDNRNSVNVRIRWYYRPEDSLGGRRIFHGTNELFLSDHHDVQSADTIEGKCIVHPFDDYIKLEKAGSDDYFCRFEYMATAGTFTPDSVAVYCICELPYNPDIFMMQCERCQDWYHLACIGMTAEEADKLEHYICSECSSENHLKKSKAASSVPAIHDKEKLDANTFHSDGIPPAIKEPCDNLVGNEVPNAIECVTPIAAPLVVSNVEAENVEVVHVEAENVEVVPVDAENVEVVHVDVGEEEKTNEEKDDEHKSNEDQVKSKPIEEPIQGQGDDQVPTNDIKTSMEPQKNDTNGTNPESMERKRKQPMEEMGGPTNQAPKLNGNPHTNINYIETQVDSVVKAINVLNNIAGMEVGGSLWCNALYLLEDPVKRTMFLQMGDDACRLAWINFRCKMGM* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0145 445 SMART PHD_3 140 187 IPR001965 -
Lan19g0145 445 Pfam BAH domain 22 135 IPR001025 GO:0003682
Lan19g0145 445 SUPERFAMILY FYVE/PHD zinc finger 132 196 IPR011011 -
Lan19g0145 445 MobiDBLite consensus disorder prediction 282 372 - -
Lan19g0145 445 MobiDBLite consensus disorder prediction 321 344 - -
Lan19g0145 445 Pfam PHD-finger 140 188 IPR019787 -
Lan19g0145 445 MobiDBLite consensus disorder prediction 282 312 - -
Lan19g0145 445 ProSitePatterns Zinc finger PHD-type signature. 141 186 IPR019786 -
Lan19g0145 445 PANTHER OS08G0421900 PROTEIN 3 212 - -
Lan19g0145 445 Gene3D - 2 132 IPR043151 -
Lan19g0145 445 ProSiteProfiles Zinc finger PHD-type profile. 138 189 IPR019787 -
Lan19g0145 445 PANTHER BNAC03G64850D PROTEIN 3 212 IPR045205 GO:0006325|GO:0035064
Lan19g0145 445 SMART BAH_4 21 136 IPR001025 GO:0003682
Lan19g0145 445 ProSiteProfiles BAH domain profile. 21 136 IPR001025 GO:0003682
Lan19g0145 445 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 202 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0145 Lan-Chr19 1269329 1278453 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0145 29 132 Core DNA Replication Machinery Family AT4G14700 27.119 2.58e-06 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lan19g0145 BAH 3.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0145 K25868 - lang:109333863 849.351