Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0143 ATGGCGATTACAACTCCAATGGATATAGTCTCATACATCACCATCAGAGGCACCAACAAGGTCGTAAGAGTTGGGGATTGTGTGTTGATCCGTCCTTCGGATGGGAGCGATCGGGCGCGTGTGGCGCGTGTGGAATTGATTGGTCGGGATGATAACAACAATGTGAATGTACATGTGATGTGGTATTATAGGCCTGAAGAATCTTTTGCGGGACGGAGGCAGTTCCATGGAGCAAGGGAACTTTTTCTCTCTGATCAATATAGTGTTCAGAGTGTTGACAACATTCAAGGGAAGTGTAATGTGCACTCCTTGAAGAACTATACTGAGCTTCGGAATGTAAACGCTTGGGATTACTTTTCTAGGTTTTGTTACAATGTTTCTACTGGCACATACACGCCCGACCAAGTTGCTGTGTTTTGTAAGTGTGAGTTGCCTCAAAACCCGGATGAATTCATGCTGCAATGTAAACAGTGCGAGGATTGGTTCCATCCCTTGTGTGCGGGCTTGACTATTGGATATGCAAAGAGATTGGAAAACTTTGTATGTTCAGATTGTTCATCTGATGAGGCATAA 573 0.445 MAITTPMDIVSYITIRGTNKVVRVGDCVLIRPSDGSDRARVARVELIGRDDNNNVNVHVMWYYRPEESFAGRRQFHGARELFLSDQYSVQSVDNIQGKCNVHSLKNYTELRNVNAWDYFSRFCYNVSTGTYTPDQVAVFCKCELPQNPDEFMLQCKQCEDWFHPLCAGLTIGYAKRLENFVCSDCSSDEA* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0143 190 ProSitePatterns Zinc finger PHD-type signature. 140 185 IPR019786 -
Lan19g0143 190 ProSiteProfiles BAH domain profile. 20 135 IPR001025 GO:0003682
Lan19g0143 190 PANTHER OS08G0421900 PROTEIN 12 189 - -
Lan19g0143 190 Pfam PHD-finger 139 187 IPR019787 -
Lan19g0143 190 Gene3D - 6 133 IPR043151 -
Lan19g0143 190 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 190 IPR013083 -
Lan19g0143 190 SUPERFAMILY FYVE/PHD zinc finger 129 186 IPR011011 -
Lan19g0143 190 SMART PHD_3 139 186 IPR001965 -
Lan19g0143 190 Pfam BAH domain 22 134 IPR001025 GO:0003682
Lan19g0143 190 PANTHER CHROMATIN REMODELING PROTEIN EBS 12 189 - -
Lan19g0143 190 SMART BAH_4 20 135 IPR001025 GO:0003682
Lan19g0143 190 ProSiteProfiles Zinc finger PHD-type profile. 137 188 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0143 Lan-Chr19 1249291 1252009 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lan19g0143 BAH 7.6e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0143 K25868 - lang:109333889 315.849