Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0142 ATGGCGAAAACGAGACCAGGAAAAAGAGACATAGACTCGTACACAATCAAAGGCTCAAACAAGATCGTAAGAGCTGGGGATTGTGTTTTGATGCGTCCTTCGGATACGAGCAAGCCACCATACGTGGCACGCGTGGAGAAGATTGAGCAGGATGGTAGGAGCAATGTGAAGGTTCGTGTGAGATGGTATTATAGGCCTGAAGAGTCTATTGGAGGAAGGAGGCAGTTCCACGGAGCAAAGGAGCTTTTTTTGTCTGATCATTATGATGTTCAGAGTGCTCACACCATTGAAGGGAAGTGTATTGTGCACTCCTTCAAGAACTATACTAAGCTTGAGAATGTAGGTGCTGAGGATTACTATTGTAGGTTTGAGTACAAGGCTGCTACTGGGGCTTTCACACCGGACCGTGTTGCTGTGTATTGCAAATGTGAGATGCCTTATAACCCAGATGACCTAATGGTTCAGTGTGAGGGATGCAAGGATTGGTACCATCCTGCTTGTGTGGGCATGACTATTGAAGAAGCAAAGAAATTAGACCATTTTGTATGTTCTGAATGTTCTTCTGACGATGACTTGAAGAAACCCCAGGTGACATTTCCTGGATCACCGGCCTCTGATGGCAAGGTGGAGCCGAAGCGACGGAAGAGAGGACCATGA 657 0.4658 MAKTRPGKRDIDSYTIKGSNKIVRAGDCVLMRPSDTSKPPYVARVEKIEQDGRSNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHYDVQSAHTIEGKCIVHSFKNYTKLENVGAEDYYCRFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACVGMTIEEAKKLDHFVCSECSSDDDLKKPQVTFPGSPASDGKVEPKRRKRGP* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0142 218 PANTHER OS08G0421900 PROTEIN 3 213 - -
Lan19g0142 218 PANTHER BNAC03G64850D PROTEIN 3 213 IPR045205 GO:0006325|GO:0035064
Lan19g0142 218 SUPERFAMILY FYVE/PHD zinc finger 132 189 IPR011011 -
Lan19g0142 218 SMART PHD_3 140 187 IPR001965 -
Lan19g0142 218 CDD BAH_BAHCC1 22 156 - -
Lan19g0142 218 Gene3D - 2 132 IPR043151 -
Lan19g0142 218 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 198 IPR013083 -
Lan19g0142 218 SMART BAH_4 21 136 IPR001025 GO:0003682
Lan19g0142 218 MobiDBLite consensus disorder prediction 187 218 - -
Lan19g0142 218 Pfam PHD-finger 140 188 IPR019787 -
Lan19g0142 218 ProSiteProfiles BAH domain profile. 21 136 IPR001025 GO:0003682
Lan19g0142 218 ProSitePatterns Zinc finger PHD-type signature. 141 186 IPR019786 -
Lan19g0142 218 Pfam BAH domain 23 135 IPR001025 GO:0003682
Lan19g0142 218 ProSiteProfiles Zinc finger PHD-type profile. 138 189 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0142 Lan-Chr19 1243878 1246787 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0142 31 132 Core DNA Replication Machinery Family AT4G14700 29.126 3.30e-10 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lan19g0142 BAH 2.2e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0142 K25868 - gmx:100800993 444.506