Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0140 ATGTTAATCAGCAAAGTAGCAGAGGATTTATGTCATGATAACATTGAAGGATCCAATGAAGAAAGACAGATTTTTGCAGAGGTATTTTCTGGTAGTGACATTTTTCAATCTAGTGAGAGGTGTCTTGTTTCTGGAGTTATCAACTTTGAATGTGAGTCCAATAAAAAAACATTTAAATCATTTTGCTCTAGTAATGAAAACACAGTTGTAATGCAACCCTTGTCTTCAAGACTTATGCATCCTGACGAGGACCTTAATGCAATTCAGCATTCCAAAGAGACTGCTCCAGGGTGTATGCCAGAGAGTTTGATTTGTGATGACCAAAATGACGAGGATATGAATGCAAAACGTATGAATTTTTCTCTACATGGACTTCCTTGTAGTATATCTAATTCAGGAAATGTTTTGAGTTCATCGGGACTTTCAAAAGTAGTTTCTAACCTGTCTTATGCTGCTACAGACTGTGATAGTGAACCCTTTCTATTCCGTTTAGTTGAATCATCGAAGCATGGTGTGATATCTAGTCAATATCTGTTGAAGCATAACTTGTTACAGAATAAAGAAATTGCCACGGATGACGTAGATGTCACAAATTGTAAATCAACAACTGCAGGTGAGAGTGCTGCAAAAGAGATGTCCGTAACTAAAGTGGTTGCTTCTCCTGTTTCCCAGGAGAGCTTTGCAAACAAGCTTGTAGTTCCAAATCCATCAGTTTCTGTTGTGGATAAGCCTGGGTCTCCTTTACATCCTGGTGAAATGCCGAAAGATTTTTTATCTTCTGAAATGGATATCTCAAATTCATCCTCAAAGCTAGACCAAAAGGACCCTCGTACTTCACTGCAATTTTATATTTCGCAGTTGCTTACGTCGGCCGGATGGTCTATTGAGAAGCGCCATCGACCTAGTAGGCGTTACATGGATTCAGTTTATAGGACACCAAAGGGAAAACCTGTTCGGGAATTTACTAAAGCTTGGAGATTATGTGGTCAGCTTTTGTCTGTTGAAAAATGCAATGTAATGTATGAATATTGTAAGGAATGGACTGATATTAGTCAATTCTGTTCTGATTTATCTAGTGCACTGATAAATGTTGAAAAAACTAGGAACCAATCAGAGCCTTGTGTTATGTTGGCTCATCAATGGTGGCTTTTGGATCCTTTTGTAGTAGTCATGTTTCTTGATAGAAAGATTGGTGCTTTGAAAAAGGGAGAGATAGTGAAAGCCACTTGGAGTTTAGTTTCTAGCAAGTATAAGATGGCACGTGCTCCCATTGGATCAGCTTGGGAGGATACTTCTGGTGCTCATTTTGATCCGAACCACGACAAAGCCATTCACTGTGATTATTCTACTGGAATTGCAAGCCCTATTCCACAGTCCGAATGTAGTGATGAAGAGGGTAGGAAAATATCAGTAACTTCTGAAGTTGAGCCAGATAACACATGTTCTGCCACCAATGTTCTTAAAAAGAAAATGCGGAGAAAATGCAAAAGGGTTTCTGAAATCAATCTGAGTATGTCATACTATAGTGACATGCTTGGCTCAACTGTTACTGACCCGGTGCAGCCACTGAATGGTGATGCATGTGATAATCAGTTAGCATTGGAAGAGGACCAGGATTATCTAGTTGACAGTGCAAGAAAGAAAAGAAGCTGCAGGAAGTTATCATCTGTCAATGCATTCGAACAAAATATTATGAAAGCAAATCACTCCATGACTGGAATGAATAAGTCCAAGAAATGCCAGATTAAAGATGATGATCTGTTGGTGTCAGCAATATTCAGGAATAAGGACTTCAGCTCAAAGACAACCCGAGGTAATTCTAGAGGTAAATCCTGCAAATCTAGAGTCCAGAGAAAGCTTAAAAGCAAAAAAGGTCATTGCAGGTTGCTACCAAGGAACCCTTGTAATGCAGGGAAGCACAATAAGGACGGCAAGTGGTATCATTTGAGGGCAAGGACGGTCTTGTCCTGGTTGATTGAGAATGGGGTAATATGCTTAAATGATATGATTCAATACCGAAATCCTAAAGATAATGCTGTCATTAAGGATGGTAGGATAACCAAAGATGGTATTATTTGCAAGTGTTGTGGTAAGGTGCATACATTATCAGGGTTCAAGTTTCATGCTGGGTTCATGCTGAATCGCCCCTGCTTGAATCTTTTCATGGGATCCGGTGAGCCCTTTACACTGTGCCTCCTTCAAGCTTGGTCAGATGAATACAAAGCCAGGAAAAGTCAGAATCAAGCTGTTAAAGTTGATAATGATGATAGAAATGATGACTCATGCGGGTTGTGTGGTGAGGGTGGTGAGCTGATATGTTGTGATAACTGCCCATCAACTTTTCATATGACTTGTTTATCGACTCAGGAGATCCCTGATGGCAACTGGTACTGCACATACTGCACTTGTCGGATATGTGGAGATTTGGTCATTGATAAAGAGGCTTCGGATGCTTATGGTGCATTGCAATGTGCACAGTGTGAACATAAATATCATGAGAAATGCCTGAGAGCAAGAGATCAGCAAGAAGTGGCGGTATCAGACACTTGGTTTTGTGGACAGAGTTGTCAGGAGGTATACACTGGTCTCCAATCTCAGACGGGGTTAGTTAATCAAGCTGCTGATGGCTTCTCGTGGATGCTTCTTAAATGCATCCACGATGACCAAAAGTGTCTTTCTGCACAATGGTTTGCCCTAAAGGCAGTATGCAATACAAAATTAGCTGTTGCCCTTACCATCATGGAGGAGTGTTTTTTGTCGATGTTGGATCCAAGAACAGGCATACACATGATACCCCAAGTTTTATACAATTGGGGGTCTGATTTTACTCGCCTGAATTTTCAAGGGTTTTACACTGTGGTATTGGAGAAACATGATGTGTTAATATCTGTAGCATCTGTAAGGGTGCATGGAACTACAGTTGCAGAGATGCCTCTAATTGCAACTTGCAGTCAGTATCGTCGGCAGGGAATGTGTCGACTCCTTGTGAGTGCAATTGAAGAGATGTTAATATCTATCAAGGTAGAAAAGCTTGTGGTAGCAGCTATTCCAGATTTGGTGGAGACATGGACTAAGGGCTTTGGATTCATGCCTGTAGATGACGTCGAAAAGCAAAGATTGAAGAAAGTCAACTTGATGGTTTTTCCTGGGACAGTGATACTTGAAAAACCCTTGTACCAGAAGGAGAAAACTGAAGCAACAGATGTAACTGTGAAAGTAGGTATCAGCTCCGAAGGAATGGCCGCAGCTGAATCATTGCTGGAAGATGTTGGAAACTTATCTACCGACAAAGTTGGTGCCGAGTCAGAATCTGAACCTGTGGACATTGAGAATCACCTAGACTGCGAAGCTGGCAGTGAAGCCATCAGAATCGATAGTGAGCAGCAAAATGCAAACGATAATGAGCAAATAATCCAGTTAACGGTGTCAAGCAGCCCAGGCAAATCTAATGAAGTATACAACACGCAGGAATCTGGAGCGGAGAAGGAAATTCAAATGGTGGTAATTGAGTCTGTACAGCAATCGAGTGACAACTGTTGTGCTAACAAAGATGGTGCCGAATCAGATGTAAAAATCGTCGAGGACAAGAATATCGAAGTAGGTGAAGTTCAGGAAAATGCTTTGCAGGACCATTTTTCAAATTTGTCCTGCAGAACATCTTTAGGTAGCAATTTTGACATGGTTTCCAATATTGAATGCTCGGCTATGTATGATGAAAGCTTTTTTGGAACAGCATTTGCAAATTCTGCAAGCTGA 3756 0.4087 MLISKVAEDLCHDNIEGSNEERQIFAEVFSGSDIFQSSERCLVSGVINFECESNKKTFKSFCSSNENTVVMQPLSSRLMHPDEDLNAIQHSKETAPGCMPESLICDDQNDEDMNAKRMNFSLHGLPCSISNSGNVLSSSGLSKVVSNLSYAATDCDSEPFLFRLVESSKHGVISSQYLLKHNLLQNKEIATDDVDVTNCKSTTAGESAAKEMSVTKVVASPVSQESFANKLVVPNPSVSVVDKPGSPLHPGEMPKDFLSSEMDISNSSSKLDQKDPRTSLQFYISQLLTSAGWSIEKRHRPSRRYMDSVYRTPKGKPVREFTKAWRLCGQLLSVEKCNVMYEYCKEWTDISQFCSDLSSALINVEKTRNQSEPCVMLAHQWWLLDPFVVVMFLDRKIGALKKGEIVKATWSLVSSKYKMARAPIGSAWEDTSGAHFDPNHDKAIHCDYSTGIASPIPQSECSDEEGRKISVTSEVEPDNTCSATNVLKKKMRRKCKRVSEINLSMSYYSDMLGSTVTDPVQPLNGDACDNQLALEEDQDYLVDSARKKRSCRKLSSVNAFEQNIMKANHSMTGMNKSKKCQIKDDDLLVSAIFRNKDFSSKTTRGNSRGKSCKSRVQRKLKSKKGHCRLLPRNPCNAGKHNKDGKWYHLRARTVLSWLIENGVICLNDMIQYRNPKDNAVIKDGRITKDGIICKCCGKVHTLSGFKFHAGFMLNRPCLNLFMGSGEPFTLCLLQAWSDEYKARKSQNQAVKVDNDDRNDDSCGLCGEGGELICCDNCPSTFHMTCLSTQEIPDGNWYCTYCTCRICGDLVIDKEASDAYGALQCAQCEHKYHEKCLRARDQQEVAVSDTWFCGQSCQEVYTGLQSQTGLVNQAADGFSWMLLKCIHDDQKCLSAQWFALKAVCNTKLAVALTIMEECFLSMLDPRTGIHMIPQVLYNWGSDFTRLNFQGFYTVVLEKHDVLISVASVRVHGTTVAEMPLIATCSQYRRQGMCRLLVSAIEEMLISIKVEKLVVAAIPDLVETWTKGFGFMPVDDVEKQRLKKVNLMVFPGTVILEKPLYQKEKTEATDVTVKVGISSEGMAAAESLLEDVGNLSTDKVGAESESEPVDIENHLDCEAGSEAIRIDSEQQNANDNEQIIQLTVSSSPGKSNEVYNTQESGAEKEIQMVVIESVQQSSDNCCANKDGAESDVKIVEDKNIEVGEVQENALQDHFSNLSCRTSLGSNFDMVSNIECSAMYDESFFGTAFANSAS* 1252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0140 1251 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 912 1059 IPR000182 GO:0016407
Lan19g0140 1251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 752 803 IPR013083 -
Lan19g0140 1251 SUPERFAMILY FYVE/PHD zinc finger 748 802 IPR011011 -
Lan19g0140 1251 Pfam Tify domain binding domain 684 734 IPR032308 -
Lan19g0140 1251 Gene3D - 934 1045 - -
Lan19g0140 1251 PANTHER PHD FINGER PROTEIN 12 462 1248 IPR042163 GO:0003714|GO:0045892
Lan19g0140 1251 PANTHER INCREASED DNA METHYLATION 1 1 427 - -
Lan19g0140 1251 PANTHER PHD FINGER PROTEIN 12 1 427 IPR042163 GO:0003714|GO:0045892
Lan19g0140 1251 SMART PHD_3 761 802 IPR001965 -
Lan19g0140 1251 SMART PHD_3 803 857 IPR001965 -
Lan19g0140 1251 ProSiteProfiles Zinc finger PHD-type profile. 759 804 IPR019787 -
Lan19g0140 1251 Pfam PHD-finger 762 803 IPR019787 -
Lan19g0140 1251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 804 861 IPR013083 -
Lan19g0140 1251 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 912 1035 IPR016181 -
Lan19g0140 1251 PANTHER INCREASED DNA METHYLATION 1 462 1248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0140 Lan-Chr19 1225858 1234282 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0140 1 1063 PHD Transcription Factor Family AT3G14980 41.835 0.0 793
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lan19g0140 TDBD 3e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0140 - - lang:109334132 2501.47