Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0132 ATGAAGAGGAACACTTTGAGCACAAGCTATGCTAACAACTACAACAGCAACAAGAATCAAATGGTGATGAAAGAGTTTTTGGATTGCAACAACTCTCATAATGGAGAGGATGATCACTACATGAATGGTTTCCCATGGCCACCAAGATCATACACTTGTAGCTTCTGCAGGAAGGAATTCAAGTCTGCTCAAGCACTTGGTGGACACATGAATGTGCATAGAAGGGATAGAGCAAGGTTGAGGCAATCATCACCTCCACCAACTCCAAATAGTGATCATAATCATCATGGTCATGCTCATGGTCAAGGCCATCCTATGCTGAACCTTAACCTAAACCCTAACTTCTCATCATCAACCTCATCTAATAATTTATCCTTTTTGCCACCATCATGGTCTTCTTCTCATTTTTCAACTCACAAACCACATGTCACTTCCACATTGCCCTTGCTTGTTTCTCCCACCACTACTACTACTACTCCATCTTCTTCTTATTCTTCTCCATCATCTGCTTCACCTTCTGAGTTGAAGAGATGGGTTGTTGTGGATGGTATCTTATTGAAGAACCCTTTGACCACAAAGACATCTGAGGCAACAAAATCAAAGATTGGAGAAGATGGGTGTAAAATATTGAAGAAAAGTGAGATTCTTAGGATGGACTTGGAGATTGGTTTACCTAGAGAATATGATTTGGATCTGGAGCTTCGTTTGGGTAATTGA 717 0.4073 MKRNTLSTSYANNYNSNKNQMVMKEFLDCNNSHNGEDDHYMNGFPWPPRSYTCSFCRKEFKSAQALGGHMNVHRRDRARLRQSSPPPTPNSDHNHHGHAHGQGHPMLNLNLNPNFSSSTSSNNLSFLPPSWSSSHFSTHKPHVTSTLPLLVSPTTTTTTPSSSYSSPSSASPSELKRWVVVDGILLKNPLTTKTSEATKSKIGEDGCKILKKSEILRMDLEIGLPREYDLDLELRLGN* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0132 238 ProSiteProfiles Zinc finger C2H2 type domain profile. 51 78 IPR013087 -
Lan19g0132 238 SUPERFAMILY beta-beta-alpha zinc fingers 48 77 IPR036236 -
Lan19g0132 238 MobiDBLite consensus disorder prediction 147 171 - -
Lan19g0132 238 ProSitePatterns Zinc finger C2H2 type domain signature. 53 73 IPR013087 -
Lan19g0132 238 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 2 237 - -
Lan19g0132 238 PANTHER OS07G0101800 PROTEIN 2 237 - -
Lan19g0132 238 MobiDBLite consensus disorder prediction 67 114 - -
Lan19g0132 238 Gene3D Classic Zinc Finger 47 97 - -
Lan19g0132 238 Pfam C2H2-type zinc finger 51 75 - -
Lan19g0132 238 SMART c2h2final6 51 73 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0132 Lan-Chr19 1165642 1166593 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0132 34 237 C2H2 Transcription Factor Family AT3G23130 40.580 5.40e-31 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan19g0132 zf-C2H2_6 1.5e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0132 - - var:108333719 191.815
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan19g0132 19 1165642 1166593 Lan5g0877 5 21763091 21763926 LSH