Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0092 ATGGCGAAACCTGGGCGACTTCGTCGTTCACCATCATCCTCTCGATCTTCCTCTCGTTCTCGCTCCTCTTCTCGTTCTCGTTCTCGCTCCAGATCCTTCTCTTCATCTTCTTCCTCGCCCTCTCGCAGCCCTATTCGATCCCCTCCTCCTCACAGAAGAAAGAGTCCTGCTGAAGCAGCTAGACGAGGTCGATCTCCTCCACCTCCGTTTAAAAGAACTTCTCCTCCCCCAAGGAAGCCGTCTCCTATACGTGAATCACTTGTTCTGCATGTGGATAAACTAAGCAGAAATGTCAATGAAGGCCATTTGAAAGAAATTTTTGGTAACTTTGGTGAGGTTGTAAGTGTGGAGTTGGCAATGGATCGAGCTGTTAATCTTCCAAAAGGTTATGGATATGTGCAATTCAAGACAAGAGATGATGCTGAAAAAGCATTGTCATACATGGATGGTGCCCAAATAGATGGCAACATCATTAAGGCAAGATTTACTCTACCTCCTCGACAGAAAGTTTCACCGCCCCCAAAGGCTTCTGCTGTAGCTCCGAAGAGAGATGCACCTAAGACTGATAATGCTAGTGCAGATGCTGAAAATGATGGGTCAAAGCGGCAAAAAGAATCGTCTCCACGGAGAAAACCTCTCTCACCAAGAAGGAGATCTCCTGTGCCTCGAAGAGTTGGATCGCCAAGAAGACCAGATTCTCCTCGCCGTCGTGCAGATTCTCCTGTTCGTCGTCGATTAGACTCTCCTCCTTATCGTCGTGGAGACACACCTCCTAGGAGGAGGCCCATATCTCCTGGAAGAGGCCGTTCTCCATCTCCGCCAAGGCGCCCTAGATCTCCTGCAAGAGTCTCACCTAGAAGGATGCGTGGAAGCCCAGGTCGCAGACGTTCTCCTCCTCCCCCAAGGCGCCGTTCACCACCTAGACGAGCCCGTAGTCCTCCTAGAAGATCTCCAATTGGTCGTAGGCGCAGTCGCTCTCCAGTACGTAGGTCTGCACGCTCACGTTCGAGATCATTCTCACCTCGAAGGGGTCGACCACCTGTGAGACGTGGGAGGTCATCATCCTACTCTGATTCACCAAGTCCACGCAAGATCCGGCGATCAAAGAGCCGCAGTCCCAGAAGGCCTTTGAGAGGAAGAGGCAGTAGCAACAGCAGCAGTAGCAGTTCACCACTCCCACCACCACCTCCGCATCCACCTCGCAAACCATAG 1212 0.5165 MAKPGRLRRSPSSSRSSSRSRSSSRSRSRSRSFSSSSSSPSRSPIRSPPPHRRKSPAEAARRGRSPPPPFKRTSPPPRKPSPIRESLVLHVDKLSRNVNEGHLKEIFGNFGEVVSVELAMDRAVNLPKGYGYVQFKTRDDAEKALSYMDGAQIDGNIIKARFTLPPRQKVSPPPKASAVAPKRDAPKTDNASADAENDGSKRQKESSPRRKPLSPRRRSPVPRRVGSPRRPDSPRRRADSPVRRRLDSPPYRRGDTPPRRRPISPGRGRSPSPPRRPRSPARVSPRRMRGSPGRRRSPPPPRRRSPPRRARSPPRRSPIGRRRSRSPVRRSARSRSRSFSPRRGRPPVRRGRSSSYSDSPSPRKIRRSKSRSPRRPLRGRGSSNSSSSSSPLPPPPPHPPRKP* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0092 403 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 91 158 IPR000504 GO:0003723
Lan19g0092 403 SUPERFAMILY RNA-binding domain, RBD 72 171 IPR035979 GO:0003676
Lan19g0092 403 SMART rrm1_1 88 161 IPR000504 GO:0003723
Lan19g0092 403 CDD RRM_RNPS1 89 161 IPR034201 -
Lan19g0092 403 PANTHER BNAA09G56240D PROTEIN 1 383 - -
Lan19g0092 403 MobiDBLite consensus disorder prediction 163 403 - -
Lan19g0092 403 MobiDBLite consensus disorder prediction 280 349 - -
Lan19g0092 403 MobiDBLite consensus disorder prediction 68 82 - -
Lan19g0092 403 MobiDBLite consensus disorder prediction 228 262 - -
Lan19g0092 403 MobiDBLite consensus disorder prediction 389 403 - -
Lan19g0092 403 Gene3D - 6 171 IPR012677 -
Lan19g0092 403 MobiDBLite consensus disorder prediction 1 85 - -
Lan19g0092 403 MobiDBLite consensus disorder prediction 9 42 - -
Lan19g0092 403 MobiDBLite consensus disorder prediction 187 212 - -
Lan19g0092 403 PANTHER RIBONUCLEIC ACID BINDING PROTEIN S1 1 383 - -
Lan19g0092 403 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 87 165 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0092 Lan-Chr19 728319 733728 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0092 89 162 Eukaryotic Initiation Factors Gene Family AT2G23350 36.486 4.62e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0092 K14325 - gmx:100783566 272.707