Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0077 ATGCAACAAAACCTAAGGTTGTGTGATAAGAGAGAGATTACCATGGGAAAAGGAAGAGCACCATGTTGTGATAAGACTCAAGTTAAGAGAGGACCTTGGAGCCCTGAAGAAGATCTCAAACTCATAGCTTTTATTCAGAAAAATGGCCATGATAATTGGAGATCTCTCCCCAAACAATCAGGGCTTTTGCGGTGTGGGAAAAGTTGTCGTTTGAGATGGATCAATTATCTCAGACCTGATGTAAAGAGAGGCAATTTTACAATACAAGAAGAGGAAGCCATAATAAGACTACATAAGGACTTTGGAAATAAGTGGTCAAAGATTGCATCCTGTTTGCCTGGTAGGACTGACAATGAGATCAAGAATGTGTGGAACACTCACTTAAAGAAAAGATTGAGTATCCAAAGTTCTGAATCTAGCACAGATGAATCCAAACTTGAATCATCAATAACTTCCTCTTCCTCATCTTTATCTGAATCATTGTCCTCAAATGATGCACCAAATCTAGCAGCAAAGACTATTCCTAGTAATGAACTAAATGAACAAGAAACCCTAGAAACAATGAATGATAAAATTGAACAACATTCAGAAAAACAAATATCCAATGAAGTTATTAGCATCATTGAGGACCCAAAAGAGTTAACAACTTCACTCTCTTTTGTTGAATCAAATATCCTTAACTCAAACCACATTGTTGCTTTCACACCAGAACAACAATTATGTTCTCCATTAACCAATCTAGAACCCTATGATGCTGACAATAATAATACATTGCAAGAGGTTGATAAACCAAACCATCTTAATGAAATACCATGGGATTTAGATGATGATATTTGGAAGATGGTAGATAACTTTGTATCAATGCAATCAAATGAAGTCCAATTAGAGGGGGTCCCATCAAACCAAATCTCAAATCCTATAGAAGAGAGTGTTCAAGATGTTGAAACCATGAAATGGTTCCATGAATTTGATAATGTGTTTGGATTAGTAGGTGAAACAAATGAATCTAACAAAGATGGGTATCTACCAAAGAATTATTCATCTGAACTAGGAGTGGACCCTCAAACATTTGATTTGGATGTTATGGAAAGTACAGAATCTGAATTAGATTTGAGTTATATTCAATTATGGCTCATGGCCTGA 1143 0.3578 MQQNLRLCDKREITMGKGRAPCCDKTQVKRGPWSPEEDLKLIAFIQKNGHDNWRSLPKQSGLLRCGKSCRLRWINYLRPDVKRGNFTIQEEEAIIRLHKDFGNKWSKIASCLPGRTDNEIKNVWNTHLKKRLSIQSSESSTDESKLESSITSSSSSLSESLSSNDAPNLAAKTIPSNELNEQETLETMNDKIEQHSEKQISNEVISIIEDPKELTTSLSFVESNILNSNHIVAFTPEQQLCSPLTNLEPYDADNNNTLQEVDKPNHLNEIPWDLDDDIWKMVDNFVSMQSNEVQLEGVPSNQISNPIEESVQDVETMKWFHEFDNVFGLVGETNESNKDGYLPKNYSSELGVDPQTFDLDVMESTESELDLSYIQLWLMA* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0077 380 ProSiteProfiles Myb-like domain profile. 25 77 IPR001005 -
Lan19g0077 380 CDD SANT 85 128 IPR001005 -
Lan19g0077 380 ProSiteProfiles Myb-like domain profile. 78 128 IPR001005 -
Lan19g0077 380 Gene3D - 85 154 - -
Lan19g0077 380 MobiDBLite consensus disorder prediction 134 181 - -
Lan19g0077 380 CDD SANT 32 77 IPR001005 -
Lan19g0077 380 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 78 132 IPR017930 -
Lan19g0077 380 PANTHER - 15 335 - -
Lan19g0077 380 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 15 335 - -
Lan19g0077 380 Pfam Myb-like DNA-binding domain 83 128 IPR001005 -
Lan19g0077 380 Pfam Myb-like DNA-binding domain 30 77 IPR001005 -
Lan19g0077 380 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 25 77 IPR017930 -
Lan19g0077 380 Gene3D - 23 82 - -
Lan19g0077 380 SUPERFAMILY Homeodomain-like 28 124 IPR009057 -
Lan19g0077 380 SMART sant 82 130 IPR001005 -
Lan19g0077 380 SMART sant 29 79 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0077 Lan-Chr19 591358 594290 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0077 15 335 MYB Transcription Factor Family AT1G79180 42.655 5.41e-75 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan19g0077 Myb_DNA-binding 5.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0077 K09422 - gmx:100101836 427.943