Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0065 ATGGCAGCATTGAAACTAGCCATGAAACTTCGATCCTCAAACCTTCTCTCCATTCACTTTCAGATTCAACACTCCACTCCTTCTCTCACTCGAAAGATAAGCATAGATGCACGGAGTGTTGCTTCCCAGCTTAATAGTTCTGGCCTTTTGAGGACTCAGGGGCTTATTGGAGGGAAATGGAGCGATGCTTATGATGGGAAAACAATAAAGGTTTACAATCCAGCAACGGGTGAATCCATAGCAGATGTTGCATGCATGGGTGAAAGAGAGACGAATGATGCAATTTCTTCAGCCTATGATGCATTTAGATCATGGAGCAAAATCACTGCTGCTGAGAGGAGCAAATATCTGAGGAAATGGTATGATTTGCTAATTGCACATAAAGAAGAGCTAGCACAGCTTATGACCTTGGAGCAAGGGAAGCCTCTTAAAGAATCTTTGGGCGAGGTAAACTATGGGGCTGCTTTTATTGAGTTTGCATCTGAGGAGGCAAAACGTATATATGGTGATATAATTCCGTCACCTCTATCTGATCGGCGATTATTTGTTTTAAAGCAGCCTGTCGGGGTTGTAGGTGCAATCACACCATGGAACTTTCCCCTGGCCATGATTACGCGAAAGGTTGGTCCAGCCCTAGCATGTGGCTGTACAGTGGTCATAAAGCCCTCTGAACTTACGCCTCTCACTGCTTTAGCTGCTGCAGAACTCTCTATTCAAGCTGGAATACCTGCGGGTGTTGTGAATGTGGTTATGGGAAATGCTCCTGAAATTGGGGACGCTTTAGTTGCAAGTCCACAGGTACGCAAGATCACATTCACTGGCTCAACAGCTGTTGGAAAGAAATTGATGGCAGGTTCAGCCGAGACAGTAAAAAAAGTATCGCTGGAACTTGGTGGCAATGCACCTTGCGTAGTTTTTGATGATGCTGACCTGGATGTTGCAGTAAAAGGAACTATTGCAGCAAAGTTCCGTAATAGTGGACAAACATGTGTTTGTGCTAATAGAATTCTCGTGCAAGAAGGTATATATGACAAATTTGCAAAGGCTTTGATTGATGCTGTCCAGAATATGAAAGTCGGGGATGGTTTTAGTGAAGGTGTTGCTCAGGGCCCTCTGATCAATGAAGCTGCTGTTAAAAAGGTCGAGACCTTACTTCATGACGCTACATCAAAGGGGGCTAAAATAGTTCTTGGAGGTAAAAGGCATAGCCTTGGATTAACCTTTTATGAACCAACGGTCGTCCGTGATGTCAGTAATGAGATGCTAATATCAAGAGAGGAAGTGTTTGGACCTGTCGCACCCCTTTTGAAGTTCAAAACCGAAGAGGATGCTATTGGAATTGCTAACAACACTAATGCAGGTTTGGGTTCATACGTATTTACTAGCAGTATCCAACGCTCATGGCGTGTTGCCGAGGCTCTTGAATATGGACTTGTGGGTGTCAATGAAGGAGTGATTTCAACTGAGGTGGCTCCGTTTGGCGGTTTCAAACAGTCTGGCCTTGGACGAGAAGGCTCCAAATATGGGATGGATGATTATTTAGAGATAAAGTATGTGTGCATGGGAAACATGAACAAAAACTGA 1584 0.4419 MAALKLAMKLRSSNLLSIHFQIQHSTPSLTRKISIDARSVASQLNSSGLLRTQGLIGGKWSDAYDGKTIKVYNPATGESIADVACMGERETNDAISSAYDAFRSWSKITAAERSKYLRKWYDLLIAHKEELAQLMTLEQGKPLKESLGEVNYGAAFIEFASEEAKRIYGDIIPSPLSDRRLFVLKQPVGVVGAITPWNFPLAMITRKVGPALACGCTVVIKPSELTPLTALAAAELSIQAGIPAGVVNVVMGNAPEIGDALVASPQVRKITFTGSTAVGKKLMAGSAETVKKVSLELGGNAPCVVFDDADLDVAVKGTIAAKFRNSGQTCVCANRILVQEGIYDKFAKALIDAVQNMKVGDGFSEGVAQGPLINEAAVKKVETLLHDATSKGAKIVLGGKRHSLGLTFYEPTVVRDVSNEMLISREEVFGPVAPLLKFKTEEDAIGIANNTNAGLGSYVFTSSIQRSWRVAEALEYGLVGVNEGVISTEVAPFGGFKQSGLGREGSKYGMDDYLEIKYVCMGNMNKN* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0065 527 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 47 524 - -
Lan19g0065 527 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 295 302 IPR029510 GO:0016491
Lan19g0065 527 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 323 334 IPR016160 GO:0016491
Lan19g0065 527 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 299 488 IPR016163 GO:0016620
Lan19g0065 527 SUPERFAMILY ALDH-like 47 525 IPR016161 GO:0016491
Lan19g0065 527 TIGRFAM SSADH: succinate-semialdehyde dehydrogenase 71 517 IPR010102 GO:0009013|GO:0009450
Lan19g0065 527 CDD ALDH_F5_SSADH_GabD 71 521 - -
Lan19g0065 527 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 47 524 - -
Lan19g0065 527 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 66 513 IPR016162 GO:0016491
Lan19g0065 527 Pfam Aldehyde dehydrogenase family 62 519 IPR015590 GO:0016491
Lan19g0065 527 Coils Coil 525 527 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0065 Lan-Chr19 502369 512131 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0065 28 527 Aldehyde Dehydrogenase Gene Family AT1G79440 79.600 0.0 825
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0065 K17761 - gmx:100808318 910.598