Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0061 ATGGAAGATCATAGCCAACATGAGAAAGGGTTTTTGTTGGAAAACCATAACTTAGGTTTCTCTAATTCTGATAACTCAGATAAGAGCAACAAAAAGTTAAAGATGAAACCACTAAGGAAGGGTGAAGAAGGATATGAAAGAGAGGGTTTTGTGAAAAAGAAGCCAATGCATGAAGTTTATAGTGGAAGTAGTGAGAATAAGATTAGTGTTGGTGAAGAGAATGTGAGAAAATCTCATGAAACTTATAGTGAAATGCATTTAAGAATTGAGAGAGAAAGAAGGAAAAAGATGAGGAACATGTATTCAACTCTTCGTGCTTTGATTCCAAAACTTCCTTCTAAGGTTGACCAAATAACCATTGTTAGTGAAGCAATGAACTACATCAAAAGTCTAGAGCAAACTTTGGAAATGCTTGAAAAACAAAAACAAGAAAGGCTCCAAACTAATGACCCATTTAAGTATGAATCATCTATGATCAACTCAAGGGATGAGACATGCATAGGCAATAATGGATCTTGCAACAACTTGGTATGTGCAATGTCATCGAATCCGAAAGATTCGACATCTACCTTAATCCCACAACATCTGGTTGCTTTTCAAACATGGTGTTCTCCAAATGTGGTCTTGAACATTTGTGGAAATAAAGCACAATTGTGTATTTACACAACTAAGAATCTAGAACTCTTGACTACCATTGCTTTTGTCCTGGACAAGCATAACATTGAGGTCATAGCAGCAAACATTTGGTGCAATGATAATGGAAAAGGATGCATGATTCTAGCTCAGACAAATGTAGTTTCTTCACATCAGTTTCCTGAAGCAACTTTGGTGGAGCAAATTTACAAGCAAGCTACTGAAGAAATTAAGCGATTGATCTCCTAA 882 0.3605 MEDHSQHEKGFLLENHNLGFSNSDNSDKSNKKLKMKPLRKGEEGYEREGFVKKKPMHEVYSGSSENKISVGEENVRKSHETYSEMHLRIERERRKKMRNMYSTLRALIPKLPSKVDQITIVSEAMNYIKSLEQTLEMLEKQKQERLQTNDPFKYESSMINSRDETCIGNNGSCNNLVCAMSSNPKDSTSTLIPQHLVAFQTWCSPNVVLNICGNKAQLCIYTTKNLELLTTIAFVLDKHNIEVIAANIWCNDNGKGCMILAQTNVVSSHQFPEATLVEQIYKQATEEIKRLIS* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0061 293 PANTHER - 13 290 IPR044278 GO:0003700|GO:0006355|GO:0009960
Lan19g0061 293 SMART finulus 87 137 IPR011598 GO:0046983
Lan19g0061 293 Coils Coil 121 148 - -
Lan19g0061 293 MobiDBLite consensus disorder prediction 1 41 - -
Lan19g0061 293 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 81 131 IPR011598 GO:0046983
Lan19g0061 293 MobiDBLite consensus disorder prediction 27 41 - -
Lan19g0061 293 PANTHER TRANSCRIPTION FACTOR BHLH95 13 290 - -
Lan19g0061 293 MobiDBLite consensus disorder prediction 57 77 - -
Lan19g0061 293 CDD bHLH_AtbHLH_like 86 139 IPR045239 -
Lan19g0061 293 Gene3D - 82 159 IPR036638 GO:0046983
Lan19g0061 293 Pfam Helix-loop-helix DNA-binding domain 85 132 IPR011598 GO:0046983
Lan19g0061 293 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 81 157 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0061 Lan-Chr19 477208 479701 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0061 8 288 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 33.645 1.74e-34 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan19g0061 HLH 5.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0061 - - lang:109333875 568.155