Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0059 ATGACGCAACCACCGTTTCCGCCATCCAAAATCTTATGCGCCGGTTGCCAATCGGTCCTCGATGCGCCGCCGCCGGACGTGGTGGACTTCACTTGTCCTCTCTGTCTAACGCCGCAGAGGATACTTCCGCTAGGATCAAACGCTCGCAAATCGCACGGTGTTGGTGCCACCGCTAACACGAAGGTTCCGTGTACTAACTGCAGCACCGTTTTCAATGTGCCTATTGGCCTTGCGAAATTTACTTGCCCTAAGTGCGCGCTTGAGATCACAGTCAATGTTGTCGAAGAAGTCAACGAGCTAGTGGTTGAAGTGGAGCGGGATGAGGATGAAGGTGGTGTGGCTGGAGAAACATTTACGGATTATCGACCAGCAAAAGTATCTTTTGGATCTCCACACCCAGATTCTGTTGTGGAGACATCTTCCTTGTCTGCAGTGCAGCCACCTGAGCCTACTTATGATCCAATAACTAAAGTTGATTTGGAAATTTCAAAGGCTTTGTCGTGCTTGCAAATAGAGACATTGGTCTATGCTTGTCAGAGACACCTTCAACACCTTCCTGACGGTTCTAGGGCAGGTTTCTTTATAGGAGATGGTGCTGGTGTAGGTAAAGGTCGAACAATTGCAGGGCTAATTTGGGAGAACTGGCACCATGGAAGGAGAAAAGCTTTGTGGATTTCTGTTGGTTCAGACTTGAAGTTTGATGCCAGAAGAGACTTAGATGATATTGGTGCATCTTGTGTTAATGTGCATGCTTTGAATAAACTGCCTTATTCTAAGCTTGACTCAAAGTCTGTTGGGGTCAAGGAGGGAGTTGTTTTCTTGACATACAGTAGCCTCATAGCATCTTCTGATAAAGGTTCTTCTCGTCTCCAACAACTTGGGCGGTGGTGTGGGCCACAGTTTGATGGTCTTATAATTTTTGATGAGTGTCACAAAGCCAAGAATCTGGTACCTGAATGTGGTAAACAGCCAACACGAACTGGTGAAGCAGTGCTTCATATCCAGGCTCAACTACCTGAAGCTCGTGTTGTATATTGCTCAGCCACTGGTGCATCTGAATCTCGTAATATGGGTTATATGGTTCGACTTGGTCTTTGGGGAGCTGGTACTTCGTTCAATAATTTCAGTGAATTTCTAGGTGCTCTTGAAAGGGGTGGTGTTGGAGCTCTAGAACTAGTTGCCATGGACATGAAAGCAAGGGGGATGTATTTATGTCGGACGCTAAGTTACAGTGGTGCTGAGTTTGAAGTTATTGAAGCCCCTTTAGAAGATGGAATGATGGACATGTATGAAAAGGCTGCCGAGTTTTGGGTGGAATTGCATACAAAATTGCTGTCAGCCATTAACAACCCACCTGTGAAACTTAAATGTCGTCAACTATGGGCATTATACTGGGCAAGCCACCAGCGTTTTTTTAGACACATGTGTATGTCTGCTAAAGTCCCTGCTGCTGTGAGATTAGTGAAGCAAGCATTAGTGGAAGATAAGTGTGCAGTAATTGGTCTGCAAAGCACTGGGGAAGCAAGAACAGAAGAAGCTGTGGCAAAATATGGCTCTGAACTTGATGACTTTCTTTCTGGACCTCGAGAATTGCTGCTAAAGTTTGTAGAAGAATATTACCCGTTGCCAGAAAAGCCTGAGCTTCTCCCTGTGGAAGATGGTGTAAAAGAGCTTCAGCGGAAGAGGCACTCAACAAGTCCTGATGCTTCAGCAAGAGGAAGGGTCCGAAAAGTAGCTAAGTCGGAGCCTCTTAGTGATCTTGAAAGTGAAGAATCTGAAATTGCCTCTGATCTTGAATCGGCTGAATCTGATTATGAACCAGAAGGGGAAGCTGCCTCTGCTATTGAATCATCTGACTCTGATTACGACGAGCTTCAGATGTGTCAAATTTGCAGTACTGAGGAGGAAATGGAAAATTTGTTGCAGTGTTCTTCCTGTGGTAAACTTGTCCATCAAGCATGCTTGATGCCTCCAGTTGGCCATTTAGTTCCCGAATTATGGTCATGCCATATGTGCATGGAAAAAGAAAAACCAGATGATCTAACAGCAAGACAAGCCTATCTAACTGAAATGCAGAAGGGGTATGATTCAGCCTTGGAGTGTAAGGCAAAAATATTAGAGGCCATTCATTCCTTGAATCTTCCAAATAATCCCTTGGATGATATTATTGACCAGTTAGGAGGCCCTGACAAAGTTGCAGAAATAACTGGAAGGAAAGGCATGCTTGTGAGGGACCCTAGTGGAAAGGGTGTAAATTATCGTGCTCGTAACACAAAGGATGTCACTAAGGAGATGGTCAACATGCATGAAAAGCAGCTCTTTATGGATGCTAAGAAGTTAGTTGCTATCATCTCTGAAGCTGGATCAGCTGGTGTTTCTTTACAGGCAGATAGAAGAGCGATAAATCGGAAAAGGAGGGTCCATATAACTTTAGAGCTTCCATGGAGTGCTGACCGAGCAATTCAGCAGTTTGGAAGAACTCATCGCTCAAATCAAGCTTCAGCGCCGCAATACAGGTTACTCTTTACAGACCTTGGTGGAGAGCGAAGGTTTGCATCAGTTATTGCCAAGAGATTAGAATCTCTCGGTGCTTTGACTCAGGGGGACCGTAGGGCAGGACCTTCATTAAGTGCTTATAATTATGATACTACTTATGGAAAGAGGGCTTTGATGATTATGTACAGAGGAATAATGGAGCAGGATTCTCTTCCGGTTGTACCTCCAGGATGTTTACCTGACAAGCCAGATATGATTCATGATTTTATCACGCAAGCAAAATCTGCTCTTGTATGTGTTGGAATAATTGGGGACCCAATTCATGATTCTGGAAGGATATGTGGCCACATTACCGATTCAGACATGCAAGATGTTGGGCGATTCCTCAACCGGATTTTGGGGCTAGCTCCTGGGATTCAGAATAGGCTATTTGAGTTATTTGTGAGTATCTTGGATCGTCTCATTCAAAATGCTCGCATTGAAGGTAACTTGGACACGGGCATTGTTGACATGAATGCTAATGTCATTGAACTAAAAGGATCTCCAAAGATTGTCCATGTTGATCAAGTGACTGGGGCTTCAACTGTTCTGTTCACATTCATTTTCGATCGTGGGACTACATGGGAGCTGGCAAATACCATTCTGAATGAGAAGCAGAAAGATGCCAATGATGGTTTCTATGAGTCAAGGAGGGAGTGGATGGGAAGGCGCCATTTCATTTTAGCACTTGAAAGTTCTGCTTCAGGTTTCTATAAGATAATTCGCCCTGCAGTTGGAGAATCACTTCGGGAGATGCATCTGGCAGAATTAAAAAGTAAATATAGAAAACTCTCATCTTCAAAAAATGCTCAAATTGGTTGGGAAGACGAATATGAAGTTTCTTGTAAACAGTGCATGCATGGTCCGAAATGTAAGCTTCGCAACTTCTGTACAGTCGGCCGAAGACTACAGGAAGTAAATGTCTTGGGTGGCCTCATTCTTCCTCTTTGGGGAAACATAGAATCTGCCTTCTCTAAACAGGCCCGCCTAAGCCATAGGAGGCTTCGTGTTGTTCGCATAGAAACTACTTCGGATAACCAACATATAGTTGGGCTTCTTGTTCCTAATGCAGCAGTCGATACGGTGCTTAAAGGTTTGGTTCAAGAACTAGACTTCTAA 3654 0.4431 MTQPPFPPSKILCAGCQSVLDAPPPDVVDFTCPLCLTPQRILPLGSNARKSHGVGATANTKVPCTNCSTVFNVPIGLAKFTCPKCALEITVNVVEEVNELVVEVERDEDEGGVAGETFTDYRPAKVSFGSPHPDSVVETSSLSAVQPPEPTYDPITKVDLEISKALSCLQIETLVYACQRHLQHLPDGSRAGFFIGDGAGVGKGRTIAGLIWENWHHGRRKALWISVGSDLKFDARRDLDDIGASCVNVHALNKLPYSKLDSKSVGVKEGVVFLTYSSLIASSDKGSSRLQQLGRWCGPQFDGLIIFDECHKAKNLVPECGKQPTRTGEAVLHIQAQLPEARVVYCSATGASESRNMGYMVRLGLWGAGTSFNNFSEFLGALERGGVGALELVAMDMKARGMYLCRTLSYSGAEFEVIEAPLEDGMMDMYEKAAEFWVELHTKLLSAINNPPVKLKCRQLWALYWASHQRFFRHMCMSAKVPAAVRLVKQALVEDKCAVIGLQSTGEARTEEAVAKYGSELDDFLSGPRELLLKFVEEYYPLPEKPELLPVEDGVKELQRKRHSTSPDASARGRVRKVAKSEPLSDLESEESEIASDLESAESDYEPEGEAASAIESSDSDYDELQMCQICSTEEEMENLLQCSSCGKLVHQACLMPPVGHLVPELWSCHMCMEKEKPDDLTARQAYLTEMQKGYDSALECKAKILEAIHSLNLPNNPLDDIIDQLGGPDKVAEITGRKGMLVRDPSGKGVNYRARNTKDVTKEMVNMHEKQLFMDAKKLVAIISEAGSAGVSLQADRRAINRKRRVHITLELPWSADRAIQQFGRTHRSNQASAPQYRLLFTDLGGERRFASVIAKRLESLGALTQGDRRAGPSLSAYNYDTTYGKRALMIMYRGIMEQDSLPVVPPGCLPDKPDMIHDFITQAKSALVCVGIIGDPIHDSGRICGHITDSDMQDVGRFLNRILGLAPGIQNRLFELFVSILDRLIQNARIEGNLDTGIVDMNANVIELKGSPKIVHVDQVTGASTVLFTFIFDRGTTWELANTILNEKQKDANDGFYESRREWMGRRHFILALESSASGFYKIIRPAVGESLREMHLAELKSKYRKLSSSKNAQIGWEDEYEVSCKQCMHGPKCKLRNFCTVGRRLQEVNVLGGLILPLWGNIESAFSKQARLSHRRLRVVRIETTSDNQHIVGLLVPNAAVDTVLKGLVQELDF* 1218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0059 1217 Coils Coil 584 604 - -
Lan19g0059 1217 PANTHER STRAWBERRY NOTCH-RELATED 95 1214 IPR026741 GO:0006355
Lan19g0059 1217 PANTHER STRAWBERRY NOTCH-RELATED 10 93 IPR026741 GO:0006355
Lan19g0059 1217 Pfam P-loop containing NTP hydrolase pore-1 131 431 IPR039187 -
Lan19g0059 1217 SUPERFAMILY FYVE/PHD zinc finger 616 677 IPR011011 -
Lan19g0059 1217 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 773 877 IPR027417 -
Lan19g0059 1217 MobiDBLite consensus disorder prediction 588 606 - -
Lan19g0059 1217 MobiDBLite consensus disorder prediction 557 620 - -
Lan19g0059 1217 Gene3D - 166 362 IPR027417 -
Lan19g0059 1217 Pfam PHD-finger 627 674 IPR019787 -
Lan19g0059 1217 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 571 686 IPR013083 -
Lan19g0059 1217 PANTHER OS08G0223700 PROTEIN 95 1214 - -
Lan19g0059 1217 PANTHER OS08G0223700 PROTEIN 10 93 - -
Lan19g0059 1217 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 142 383 IPR027417 -
Lan19g0059 1217 Pfam C-terminal domain on Strawberry notch homologue 717 1002 IPR026937 -
Lan19g0059 1217 ProSitePatterns Zinc finger PHD-type signature. 628 672 IPR019786 -
Lan19g0059 1217 SMART PHD_3 627 673 IPR001965 -
Lan19g0059 1217 ProSiteProfiles Zinc finger PHD-type profile. 625 675 IPR019787 -
Lan19g0059 1217 MobiDBLite consensus disorder prediction 557 587 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lan19g0059 AAA_34 2e-129 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0059 - - gmx:100808670 1766.51