Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0054 ATGCCTGATTTACCTGAGATGGACTTCAATTCAAGAGAAACTCTTAAGACAAATCATAGTAGTAGTCATAGTAGTTGTGAAAATTCAGGAAATAATTCACCAACTCACCCAACAAAGATGAATGATGCAGCAAAATATGCTAGCACAACTGAATTTTCAACTGATTCAAAGGTGACAAGTAAATCTAATAGACCTCATAAGTTGGCACCATCAGCTAGAAACATTTCTGATTTCTCTACCCAAAGTCCAAGAACAAAGAAGCCTTCAAATTTTGAGCCTGCAACTACCTCGCCGAGGCTTCCAACGGGCGCTGCTAGGGGAACGTCCAACCATTCAAAGAACACCAGTCAAGGCCCGGGGAGTGGCGCTAACTCTTGCAGCGAGAGTTTAGAGAGCACAAGTGCAACCATTAGGCCACACACTGGTGGTGATGTGAGGTGGGAGGCAATTAACATGGCTTCGAGGGGCAGTAATCTCAATCTTAAAGACTTCAGGCTTCTCAAGCGAATCGGCTATGGAGACATCGGGAGTGTATACCTTGTCGAACTTAAAGGAACCAAGGCTCACTTTGCCATGAAAGTAATGGACAAGGCAGCTCTTATCAGTAGAAATAAGCTTCTGAGAGCACAAACAGAAAGGGAGATTCTTGGACTTCTTGATCACCCTTTCTTGCCTACTTTATATTCTCACTTCGAAACTGATAAGTTTTACTGTTTGGTCATGGAGTTCTGTAGTGGAGGTGATCTACATTCTCTTAGACAGAAGCAACTTAACAAGTGTTTCACTGAAGAAGCTGCAAGGTTTTATGCTTCAGAGGTTTTGTTAGCTCTTGAGTACCTTCACATGCTTGGCATTGTATATAGAGACTTAAAGCCTGAGAATCTTTTAGTCAGAGATGAAGGCCATATCATGCTCTCAGATTTCGACTTATCGCTTCGCTGTTCCGTTAGTCCTACCCTTGTCAAGTCTTCATCTGCCCATGTAAGCAATGGTGGTGGTGACTCTGGCGCCATATTAGGCGAAGAACAAGCAGTGCAAACTTGTACTCAGTCATCAACCTTTTTCCCTCGAATTCTTCCTTCAAAGAAGAACCGTAAGGCGAAATCAGATTTTGGCCTAATGGTCGGTGGAGTTCGTCTTCCTGAACTGATGGCAGAGCCAACCAATGTGCGATCAATGTCATTCGTAGGGACACATGAGTATCTTGCTCCTGAGATTATCAAAGGAGAGGGGCATGGTAGCGCAGTAGATTGGTGGACTTTCGGTATTTTCTTGTATGAACTATTGCATGGAACAACTCCGTTTAAAGGTGCAGGATATAAGGCCACTCTTTTCAATGTTGTTGGGCAGCCGTTGAGGTTCCCGGAAACACCTCAGGTTAGCGCGGTGGCTCGTGATCTTATAAGAGGATTGTTGGTGAAGGAACCTCAGAAGAGGATTGCATATAAAAGAGGTGCAACAGAAATTAAACAACACCCTTTTTTTGAGGGAATGAATTGGGCTCTAGTTAGAAGTGCTACACCACCTCATATACCAGAACCTATAGACTTTTCCAAGTTTGCTAGCAAAGACAAAGACACAACTACACCAGCAGATAAGAAGATGGCAGATATTGCTAGTGATAAGAACAACAACAATTCTACAAATTCTTACATAGATTTTGAGTATTTTTAG 1674 0.4283 MPDLPEMDFNSRETLKTNHSSSHSSCENSGNNSPTHPTKMNDAAKYASTTEFSTDSKVTSKSNRPHKLAPSARNISDFSTQSPRTKKPSNFEPATTSPRLPTGAARGTSNHSKNTSQGPGSGANSCSESLESTSATIRPHTGGDVRWEAINMASRGSNLNLKDFRLLKRIGYGDIGSVYLVELKGTKAHFAMKVMDKAALISRNKLLRAQTEREILGLLDHPFLPTLYSHFETDKFYCLVMEFCSGGDLHSLRQKQLNKCFTEEAARFYASEVLLALEYLHMLGIVYRDLKPENLLVRDEGHIMLSDFDLSLRCSVSPTLVKSSSAHVSNGGGDSGAILGEEQAVQTCTQSSTFFPRILPSKKNRKAKSDFGLMVGGVRLPELMAEPTNVRSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLHGTTPFKGAGYKATLFNVVGQPLRFPETPQVSAVARDLIRGLLVKEPQKRIAYKRGATEIKQHPFFEGMNWALVRSATPPHIPEPIDFSKFASKDKDTTTPADKKMADIASDKNNNNSTNSYIDFEYF* 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0054 557 Gene3D Transferase(Phosphotransferase) domain 1 251 512 - -
Lan19g0054 557 CDD STKc_phototropin_like 162 516 - -
Lan19g0054 557 Pfam Protein kinase domain 382 495 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan19g0054 557 Pfam Protein kinase domain 165 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan19g0054 557 PANTHER SERINE/THREONINE-PROTEIN KINASE AGC1-5 19 557 - -
Lan19g0054 557 ProSitePatterns Serine/Threonine protein kinases active-site signature. 285 297 IPR008271 GO:0004672|GO:0006468
Lan19g0054 557 MobiDBLite consensus disorder prediction 522 539 - -
Lan19g0054 557 PANTHER FLIPPASE KINASE 1-RELATED 19 557 - -
Lan19g0054 557 SMART serkin_6 164 495 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan19g0054 557 MobiDBLite consensus disorder prediction 1 141 - -
Lan19g0054 557 Gene3D Phosphorylase Kinase; domain 1 155 250 - -
Lan19g0054 557 MobiDBLite consensus disorder prediction 522 542 - -
Lan19g0054 557 MobiDBLite consensus disorder prediction 14 139 - -
Lan19g0054 557 SUPERFAMILY Protein kinase-like (PK-like) 161 527 IPR011009 -
Lan19g0054 557 ProSiteProfiles AGC-kinase C-terminal domain profile. 496 557 IPR000961 GO:0004674|GO:0005524|GO:0006468
Lan19g0054 557 ProSiteProfiles Protein kinase domain profile. 164 495 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0054 Lan-Chr19 412386 415444 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0054 130 557 AGC Kinase Gene Family AT1G79250 73.673 0.0 677
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Lan19g0054 Pkinase 6.9e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0054 - - gmx:100819001 843.188