Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lan19g0040 | ATGGAGATTGATTTGAATGAAGAGCCATTGAACGATATAGAAGAGCGTATTAGACGCCTTGAAGGGGTAATTTTCAGAGCTAGGCAGCGTCAGAGGTGGAGACAGAGTCACACTCCAAATCAAATAACTAACTTTGCCGGAGAGTTGATAACAACAGCTAATGTTCAAGATGATGTCAGGGTGCGTCGGGAAGAGGTTGGGATTGATGCTGAAGCTGGAACTGCCGATTGTGGGAAAATTGGCAAAAGGAAAGCTACCTACTTAATTGCTAAGGCGTTGAAGACTGAAACGTATACCAATAAGGCACAGGGGTGCGGTGGAAATTTCTTTGATTGTAATATATGCTTGGGCATGGCAAGAGATCCTGTTTTGACGTGCTGTGGTCACCTGTTTTGCTGGCCATGCTTCTCTCAGTTGTCGTATGCTTATTTGGAAGCAAAGGAATGTCCAGTATGTAAAGGAGAGGTCACCGAAACTGGCGTTACCCCAATTTATGGCAATGGAGGTACCAATGACAGTGATCGGTTGGAGTTGGAAGCAACTGGTTTCAGAGTTCCTTCTCGACCTCGTGCACGTAGAGTTGAGAGTATTAGGCAGTACCTCAGAAACTAG | 612 | 0.4526 | MEIDLNEEPLNDIEERIRRLEGVIFRARQRQRWRQSHTPNQITNFAGELITTANVQDDVRVRREEVGIDAEAGTADCGKIGKRKATYLIAKALKTETYTNKAQGCGGNFFDCNICLGMARDPVLTCCGHLFCWPCFSQLSYAYLEAKECPVCKGEVTETGVTPIYGNGGTNDSDRLELEATGFRVPSRPRARRVESIRQYLRN* | 204 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lan19g0040 | 203 | SMART | ring_2 | 112 | 152 | IPR001841 | - | |
| Lan19g0040 | 203 | SUPERFAMILY | RING/U-box | 108 | 162 | - | - | |
| Lan19g0040 | 203 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 93 | 166 | IPR013083 | - | |
| Lan19g0040 | 203 | Pfam | Zinc finger, C3HC4 type (RING finger) | 111 | 158 | - | - | |
| Lan19g0040 | 203 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 7 | 201 | IPR045103 | GO:0005783|GO:0006511|GO:0061630 | |
| Lan19g0040 | 203 | Coils | Coil | 10 | 30 | - | - | |
| Lan19g0040 | 203 | PANTHER | ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN | 7 | 201 | - | - | |
| Lan19g0040 | 203 | ProSiteProfiles | Zinc finger RING-type profile. | 112 | 153 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lan19g0040 | Lan-Chr19 | 311410 | 312707 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lan19g0040 | 93 | 202 | C3H Transcription Factor Family | AT3G58030 | 53.636 | 4.06e-35 | 126 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lan19g0040 | K10666 | - | gmx:100778919 | 228.409 |