Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0027 ATGTCTAAAAGGGTTCTTTGTAAGTTCTTTGCTCATGGAGCATGTCTGAAAGGGGAACATTGTGAGTTTTCTCATGACTGGAAAGTTCCTGCAAATAATATATGCACATTTTATCAGAAAGGAGTATGTGCTTATGGTAGTCGCTGCAGATATGATCATGTCAAAGCTTCTCGATCACTGTCCTCCACCCCATCTTCTTCAGTAACCGAACACCAACCTGTGGTTTTGGATTCTGCTGTATTTGCTAATACTATAATTACATCAAATGGTATTCCTACAACTGCCGACGATTTTCCTTCTGGAGGTCCTTACCTTCTTCCAAGTCAACCAGCCTGGATTCAAGAATCTGAGTATCAAGACTTTCTCGGGGAAGATGATGTTGCCCAATCTAGAATTACTTCCCCTTCTGAGCTTTCAATATGCTCATTTGCTGCTGCTGGAAGCTGTCCACGAGGGGAAAAATGTCCTCATATTCATGGAGATCTGTGTCCCACCTGTGGAAAGCACTGCTTACATCCTTTCCGACCTGAGGAAAGAGAAGAACATACAAAGAGTTGTGAAAATAGGCAAAAGCATCTTGAGGCCTTGAAACGAAGTCAAGAAATTGAGTGCAGTGTATGCCTGGAGCGTGTTCTTTCAAAGCCTACAGCAGCTGAACGTAAATTTGGGCTGCTATCTGAATGTGATCATCCATTCTGCATATCCTGTATTAGGAACTGGCGTAGTAGTAACCCAACACTTGGGATGGATGTCAATGGCACATTGAGGGCTTGTCCTATCTGTCGTAAGCTATCGTACTTTGTCGTTCCAAGTGTCATTTGGTACTCTACAAATGAAGAAAAACTGGAAATTGTTGACAGCTACAAGGCAAAGCTCAAGTCAATGGATTGCAAGCATTTTGACTTTGGGGATGGGAACTGCCCTTTTGGAACTAGCTGTTTCTACAAGCATGCATATCGAGATGGCCGTCTTGAGGAGGTAGTTCTGCGGCATCTTGGAGCTGCAGATGGTGATACTGTAATTGCTAAAGAGATCAGGTTGTCAGATTTCCTTGCTAATATGCATTTAAGATGA 1074 0.4283 MSKRVLCKFFAHGACLKGEHCEFSHDWKVPANNICTFYQKGVCAYGSRCRYDHVKASRSLSSTPSSSVTEHQPVVLDSAVFANTIITSNGIPTTADDFPSGGPYLLPSQPAWIQESEYQDFLGEDDVAQSRITSPSELSICSFAAAGSCPRGEKCPHIHGDLCPTCGKHCLHPFRPEEREEHTKSCENRQKHLEALKRSQEIECSVCLERVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSNPTLGMDVNGTLRACPICRKLSYFVVPSVIWYSTNEEKLEIVDSYKAKLKSMDCKHFDFGDGNCPFGTSCFYKHAYRDGRLEEVVLRHLGAADGDTVIAKEIRLSDFLANMHLR* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0027 357 ProSiteProfiles Zinc finger RING-type profile. 204 262 IPR001841 -
Lan19g0027 357 Pfam RNA-binding, Nab2-type zinc finger 296 318 - -
Lan19g0027 357 ProSiteProfiles Zinc finger C3H1-type profile. 30 56 IPR000571 GO:0046872
Lan19g0027 357 Pfam CCCH-type zinc finger 34 53 IPR041367 -
Lan19g0027 357 Pfam CCCH-type zinc finger 6 26 IPR041367 -
Lan19g0027 357 ProSitePatterns Zinc finger RING-type signature. 228 237 IPR017907 -
Lan19g0027 357 Gene3D - 30 164 - -
Lan19g0027 357 SMART c3hfinal6 291 319 IPR000571 GO:0046872
Lan19g0027 357 SMART c3hfinal6 1 27 IPR000571 GO:0046872
Lan19g0027 357 SMART c3hfinal6 31 55 IPR000571 GO:0046872
Lan19g0027 357 SMART c3hfinal6 136 161 IPR000571 GO:0046872
Lan19g0027 357 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 69-LIKE 1 357 - -
Lan19g0027 357 SUPERFAMILY CCCH zinc finger 3 26 IPR036855 GO:0046872
Lan19g0027 357 Gene3D - 1 29 - -
Lan19g0027 357 ProSiteProfiles Zinc finger C3H1-type profile. 291 320 IPR000571 GO:0046872
Lan19g0027 357 PANTHER MAKORIN-RELATED 1 357 IPR045072 -
Lan19g0027 357 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 177 296 IPR013083 -
Lan19g0027 357 SUPERFAMILY CCCH zinc finger 33 53 IPR036855 GO:0046872
Lan19g0027 357 CDD RING-HC_MKRN 204 262 - -
Lan19g0027 357 ProSiteProfiles Zinc finger C3H1-type profile. 1 28 IPR000571 GO:0046872
Lan19g0027 357 ProSiteProfiles Zinc finger C3H1-type profile. 135 162 IPR000571 GO:0046872
Lan19g0027 357 SMART ring_2 204 261 IPR001841 -
Lan19g0027 357 Pfam Zinc finger, C3HC4 type (RING finger) 204 261 IPR018957 GO:0046872
Lan19g0027 357 SUPERFAMILY RING/U-box 193 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0027 Lan-Chr19 240654 245554 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lan19g0027 zf-C3HC4 3.8e-07 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0027 K15687 - gmx:100787817 634.795