Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0026 ATGTCCAACAGGTTTTGCAAGTTCTATGCCCGAGGAGCATGTTTGAAAGGGGAGCAATGTAATTTTTTTCATGAGAGTAAGGATACTCTGACTGATATTTGCTCATTCTATCAGAAAGGATTCTGTGCTTATGGTAGCCGATGCAGATATAAGCATGTCAAAGCTTCCGAAGCATCATCCTCTGCAAATGGACACCAAGCTTTGGCTTCAGATTCTGATGTGGCTCACACTACTGAAGGAACATCAAGTTGGATTCCAAAGACTATGAAATTATCTTCATCTGATGAGTGTGCAAGGAATTCACAACAAAAGCAGATGGGTGATGTTGGTGAGTCCAGTACTAGAGGTGATATACCATCTGAGCATTTCTTTTGTCAATTCTCCGCTGCTACTTGCCCCATAGGAGATAAATGTTCTCGTGTGCATGGAAGTAAGTGTTTATACTGTAGAAAACATTGCTTGCATCCTACTGATCGAAAGAAAAAAGAAAATCATTTGAGGACTTGTGAGAAAAAGGAAAAATACCTTCAGGCTTTGAAAAATAGTCAAGAAATAGAATGCAATGTTTGTCTTGATCGTGTTCTTTCCAAACCTAAACCAGCTGAATGTAAGTTTGGGGTGCTTCCTGAATGCAACCATGCTTACTGTTTATCCTGTATCCGCAATTGGCGTAATAGTGCCCCAACCTCTGGATTTGACATGAGTAATAATAATGCTAATACAGTGAGAACATGCCCTGTTTGCCGCAAACTATCATATTATGTCATCCCTAGTGATATTTGGTATTCTACTAATGAAGAAAAACAGGAAATTATTGACAACTACAAGGCAAACTGCAGGTTGATTGATTGCAAGCATTTCAACTTTGGGAATGGGAACTGTCCATTTGGGAATATTTGTTTCTACAAGCATACTGTGAAGCCTGGCTCATACACATGGATACATAACAGGCCACCACCTCGACGTAGACCTAACAATTATGATATGTATGACATGTTGGATATGCTCAGCGAAGTTGATTTATCAAGTGGGGAGCTTTATTCCATCATGAGGGGCTCTGGGCTTTACAATGATATGGATCCATTTGAGATGATGGCTATATCAGATGCAATGGCCAGTGGGGATGGTCCTTGTTTGGGTCCTTTTGATTCTGATTATGATGATTATTATGATTATGATTATGATGATGATGACGACGATGATGAAGTAGACATGGATTTTTTCCAGATGACTTCTTTGTCAGAGGCATTAGCATCTGGCGTGGACGACTTTGGCCCTGAAGATTTTGAAAATGATGAAATGCGTCCTATGGAGGCAGCGTTGTTATCAATGATGATGCATTATAATATTGAAGAAGAGGGGGAAGAAGAATACAGTGATGAATACTATTAA 1392 0.3958 MSNRFCKFYARGACLKGEQCNFFHESKDTLTDICSFYQKGFCAYGSRCRYKHVKASEASSSANGHQALASDSDVAHTTEGTSSWIPKTMKLSSSDECARNSQQKQMGDVGESSTRGDIPSEHFFCQFSAATCPIGDKCSRVHGSKCLYCRKHCLHPTDRKKKENHLRTCEKKEKYLQALKNSQEIECNVCLDRVLSKPKPAECKFGVLPECNHAYCLSCIRNWRNSAPTSGFDMSNNNANTVRTCPVCRKLSYYVIPSDIWYSTNEEKQEIIDNYKANCRLIDCKHFNFGNGNCPFGNICFYKHTVKPGSYTWIHNRPPPRRRPNNYDMYDMLDMLSEVDLSSGELYSIMRGSGLYNDMDPFEMMAISDAMASGDGPCLGPFDSDYDDYYDYDYDDDDDDDEVDMDFFQMTSLSEALASGVDDFGPEDFENDEMRPMEAALLSMMMHYNIEEEGEEEYSDEYY* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0026 463 Gene3D - 1 67 - -
Lan19g0026 463 SUPERFAMILY RING/U-box 176 255 - -
Lan19g0026 463 SUPERFAMILY CCCH zinc finger 3 25 IPR036855 GO:0046872
Lan19g0026 463 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 172 254 IPR013083 -
Lan19g0026 463 Pfam Zinc finger, C3HC4 type (RING finger) 187 248 IPR018957 GO:0046872
Lan19g0026 463 ProSiteProfiles Zinc finger C3H1-type profile. 1 27 IPR000571 GO:0046872
Lan19g0026 463 PANTHER MAKORIN-RELATED 1 461 IPR045072 -
Lan19g0026 463 PANTHER MAKORIN RING-ZINC-FINGER PROTEIN 1 461 - -
Lan19g0026 463 ProSiteProfiles Zinc finger C3H1-type profile. 278 307 IPR000571 GO:0046872
Lan19g0026 463 ProSiteProfiles Zinc finger RING-type profile. 187 249 IPR001841 -
Lan19g0026 463 Pfam RNA-binding, Nab2-type zinc finger 283 304 - -
Lan19g0026 463 Pfam RNA-binding, Nab2-type zinc finger 125 143 - -
Lan19g0026 463 Pfam RNA-binding, Nab2-type zinc finger 6 24 - -
Lan19g0026 463 ProSitePatterns Zinc finger RING-type signature. 211 220 IPR017907 -
Lan19g0026 463 ProSiteProfiles Zinc finger C3H1-type profile. 28 55 IPR000571 GO:0046872
Lan19g0026 463 SMART c3hfinal6 2 26 IPR000571 GO:0046872
Lan19g0026 463 SMART c3hfinal6 278 306 IPR000571 GO:0046872
Lan19g0026 463 SMART c3hfinal6 28 54 IPR000571 GO:0046872
Lan19g0026 463 SMART c3hfinal6 120 144 IPR000571 GO:0046872
Lan19g0026 463 SUPERFAMILY CCCH zinc finger 29 52 IPR036855 GO:0046872
Lan19g0026 463 SMART ring_2 187 248 IPR001841 -
Lan19g0026 463 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 31 53 IPR000571 GO:0046872
Lan19g0026 463 CDD RING-HC_MKRN 187 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0026 Lan-Chr19 235761 239456 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lan19g0026 zf-C3HC4 6.6e-06 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0026 K15687 - gmx:100788886 686.797