Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0025 ATGGTAGGAAAAGACAACAATTGCAACAACAACAACATTAAGAGCAAACTAAGGAAGGGTTTGTGGTCACCTGAGGAAGATGAGAAGCTGCTAAGGTACATGATAAGTAAGGGACAAGGATGTTGGAGTGACATTGCTAGGAATGCTGGTCTCCACAGGTGTGGTAAAAGCTGTCGCCTTCGTTGGATTAATTACCTCAGACCTGATCTTAAGAGAGGTGCATTCTCACCCCAAGAAGAACACCTCATCATTCATTTGCACTCCATTCTTGGCAATAGATGGTCTCAAATTGCGGCACGTCTTCCAGGACGTACAGATAATGAGATCAAGAATTTTTGGAACTCTACTGTGAAGAAAAGATTGAAAACTAATAACAACATTGACTCATCAGAGCCTAGAGATCATGTTTTGGGTGGTGAGAATGGGATCATGCCCATTAATGAACATCTTAATGAACTCATGACCATGTGCATGGATTCATCTTCTTCAACTTCATCATCCATGCATGCTATGGTTTTGACTCATGACCACTTTGACCCATTTCCCATGTTGACAAATCCTTATGATATGAGTTCATGCTTAGCCAAAGTTGAGATGGTAGATGGGCTTCATGGTGATTATGGAATATTGGAGAGTAATAAAATGGGGTTAGAAAGCGACTTTTCCTTTCCTTCACTAGAAAGTAGAAGCATTGAAAATGAAAACAATAGTGCCCCTATTGATGTGAAAAGCCATAACAACCACTTCAATAATATTTGCTTCAATAACACTGAACAGATTCAGAATTCAAACGTAGAGGAACTGTTTGGTTTTGGAAACAATGGGCAAGGGGAAAACTTAAGAATGAGAGAATGGGACTTGGAGGTTTTGATGCAAGACATATCCTATTTTCCATCCTCTGATTTCCAATTTTAA 915 0.3945 MVGKDNNCNNNNIKSKLRKGLWSPEEDEKLLRYMISKGQGCWSDIARNAGLHRCGKSCRLRWINYLRPDLKRGAFSPQEEHLIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTVKKRLKTNNNIDSSEPRDHVLGGENGIMPINEHLNELMTMCMDSSSSTSSSMHAMVLTHDHFDPFPMLTNPYDMSSCLAKVEMVDGLHGDYGILESNKMGLESDFSFPSLESRSIENENNSAPIDVKSHNNHFNNICFNNTEQIQNSNVEELFGFGNNGQGENLRMREWDLEVLMQDISYFPSSDFQF* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0025 304 CDD SANT 22 66 IPR001005 -
Lan19g0025 304 ProSiteProfiles Myb-like domain profile. 67 117 IPR001005 -
Lan19g0025 304 ProSiteProfiles Myb-like domain profile. 14 66 IPR001005 -
Lan19g0025 304 SUPERFAMILY Homeodomain-like 17 113 IPR009057 -
Lan19g0025 304 SMART sant 18 68 IPR001005 -
Lan19g0025 304 SMART sant 71 119 IPR001005 -
Lan19g0025 304 Gene3D - 73 136 - -
Lan19g0025 304 Pfam Myb-like DNA-binding domain 19 66 IPR001005 -
Lan19g0025 304 Pfam Myb-like DNA-binding domain 72 115 IPR001005 -
Lan19g0025 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 66 IPR017930 -
Lan19g0025 304 PANTHER MYB DOMAIN PROTEIN 55 8 303 - -
Lan19g0025 304 Gene3D - 16 72 - -
Lan19g0025 304 PANTHER TRANSCRIPTION FACTOR MYB83 8 303 - -
Lan19g0025 304 CDD SANT 74 117 IPR001005 -
Lan19g0025 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 121 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0025 Lan-Chr19 232027 233694 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0025 3 304 MYB Transcription Factor Family AT3G08500 49.552 3.39e-80 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan19g0025 Myb_DNA-binding 7.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0025 K09422 - gmx:100813660 410.609