Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0012 ATGGATTCTGCAAGGAGTTGGCTTCATAAGTTTCAGCCAAGAGATAAAATGAGGGCTACTTCGAGGAAGAAGAATGATAGTAATGGAGAAAATGAAGATTCAAGTGTTGTACCCCTTGATGAAGAAGCTCTTTCCAACATCACAAAGCAAAAGGTTGCGGCCGCGAAGCAGTATATTGAGAACCATTACAAAGAGCAAATGAAGAGTCTTCAGGAGAGGAAGGAGCGACGAACCATCTTGGAAAAGAAGTTGGCTGATGCTGATGTCTCTGAGGAAGATCAAAACAACCTACTTAAATTTTTAGAGAAAAAGGAAACTGAATATATGCGCCTTCAAAGGCATAAGATGGGCGTTGATGATTTTGAGTTGTTGACTATGATTGGCAAAGGTGCATTTGGAGAGGTCAGAGTCTGTCGGGAAAAGACTACAGGTCATGTATATGCAATGAAAAAGCTAAAGAAATCTGAGATGCTCCGTAGAGGCCAGGTAGAACACGTCCGGGCTGAGAGGAACCTCCTTGCAGAGGTTGACAGCAATTGCATAGTCAAACTTTACTGTTCATTCCAGGATGATGAGTATCTATATCTTATTATGGAGTACCTACCAGGTGGGGATATGATGACTCTACTTATGAGAAAGGATACCTTGACTGAGGATGAAGCCCGATTTTATGTAGGAGAAACAGTTCTGGCGATTCAATCTATACATAAACATAATTATATACATAGGGATATTAAGCCCGACAACTTATTACTTGATAGATATGGACACTTGAGACTGTCAGATTTTGGACTATGTAAACCATTAGACTGTAGCACACTTGAAGAGTCGGATTTTTCTTCAGGTCAGAATGCAAATGGATCTGCACAGAATGATGAATCTGCACCTACAAAACGCACACAACAAGAACAGTTAGAAAACTGGCAAAAGAATAGGAGAACACTAGCTTATTCTACTGTTGGTACACCAGATTATATTGCTCCAGAAGTTTTATTGAAGAAAGGTTATGGGATGGAATGTGATTGGTGGTCGCTTGGAGCTATTATGTACGAAATGTTGGTGGGATATCCACCTTTTTATTCTGATGATCCGATGTCAACATGTAGGAAGATAGTAAACTGGAAATCTCACTTGAAATTTCCTGAAGAAGCAAGGCTATCTCCAGAGGCTATAGATCTCATTAGTAAGCTTTTGTGTAATGTCAACCAGAGGTTGGGATCAAATGGTGCAGCTGAAATAAAGGCTCATTCATTCTTTGAAGGTACTGAATGGGATAAGTTGTATCAAATGGAAGCTGCATTTCTTCCTGAAGTCAATGATGAGTTAGATACTCAAAATTTTGAGAAGTTTGAAGAGTCCGATAACCATACTCAATCATCATCAAAAGTTGGTCCATGGAGGAAGATGCTTTCATCCAAGGACTTGAATTTTGTGGGATACACATACAAGAACTTCGAAATTGTCAACGACTATCAAGTTCCTGGGATGGCTGAATTGAAGAAAACCTCCAAATCAAAGGCCAAGCCATCAGTCAAGTCACTGTTTGGTGATAACGAGTCGGAGACATCGGAGGCGTCTGAGGCTTCAGATGCCTCTATAAGCAATCAATCTGCTCATGGAAGTTAA 1626 0.4022 MDSARSWLHKFQPRDKMRATSRKKNDSNGENEDSSVVPLDEEALSNITKQKVAAAKQYIENHYKEQMKSLQERKERRTILEKKLADADVSEEDQNNLLKFLEKKETEYMRLQRHKMGVDDFELLTMIGKGAFGEVRVCREKTTGHVYAMKKLKKSEMLRRGQVEHVRAERNLLAEVDSNCIVKLYCSFQDDEYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGETVLAIQSIHKHNYIHRDIKPDNLLLDRYGHLRLSDFGLCKPLDCSTLEESDFSSGQNANGSAQNDESAPTKRTQQEQLENWQKNRRTLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPMSTCRKIVNWKSHLKFPEEARLSPEAIDLISKLLCNVNQRLGSNGAAEIKAHSFFEGTEWDKLYQMEAAFLPEVNDELDTQNFEKFEESDNHTQSSSKVGPWRKMLSSKDLNFVGYTYKNFEIVNDYQVPGMAELKKTSKSKAKPSVKSLFGDNESETSEASEASDASISNQSAHGS* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0012 541 MobiDBLite consensus disorder prediction 277 305 - -
Lan19g0012 541 CDD STKc_NDR_like 119 483 - -
Lan19g0012 541 MobiDBLite consensus disorder prediction 500 541 - -
Lan19g0012 541 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 13 522 - -
Lan19g0012 541 MobiDBLite consensus disorder prediction 1 40 - -
Lan19g0012 541 MobiDBLite consensus disorder prediction 1 30 - -
Lan19g0012 541 Gene3D Transferase(Phosphotransferase) domain 1 314 437 - -
Lan19g0012 541 Gene3D Phosphorylase Kinase; domain 1 438 448 - -
Lan19g0012 541 Gene3D Phosphorylase Kinase; domain 1 92 204 - -
Lan19g0012 541 Pfam Protein kinase C terminal domain 438 482 IPR017892 GO:0004674|GO:0005524|GO:0006468
Lan19g0012 541 SUPERFAMILY Protein kinase-like (PK-like) 94 471 IPR011009 -
Lan19g0012 541 Pfam Protein kinase domain 122 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan19g0012 541 Gene3D Transferase(Phosphotransferase) domain 1 205 280 - -
Lan19g0012 541 ProSitePatterns Protein kinases ATP-binding region signature. 127 150 IPR017441 GO:0005524
Lan19g0012 541 SMART pkinase_C_6 420 484 IPR000961 GO:0004674|GO:0005524|GO:0006468
Lan19g0012 541 PANTHER SERINE/THREONINE-PROTEIN KINASE 13 522 - -
Lan19g0012 541 ProSiteProfiles Protein kinase domain profile. 121 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan19g0012 541 ProSitePatterns Serine/Threonine protein kinases active-site signature. 240 252 IPR008271 GO:0004672|GO:0006468
Lan19g0012 541 SMART serkin_6 121 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan19g0012 541 ProSiteProfiles AGC-kinase C-terminal domain profile. 420 492 IPR000961 GO:0004674|GO:0005524|GO:0006468
Lan19g0012 541 MobiDBLite consensus disorder prediction 515 541 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0012 Lan-Chr19 148857 154345 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan19g0012 1 516 AGC Kinase Gene Family AT2G20470 79.732 0.0 860
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Lan19g0012 Pkinase 6.4e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0012 K08790 - gmx:100805940 951.814